RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 FADS2P1A8MWK0 482 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 CST1P01037 141 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 PGRP06401 933 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 FAM58BPP0C7Q3 252 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 CD247P20963 164 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 CDKL1Q00532 357 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 KPNB1Q14974 876 aaKnown RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 CTC1Q2NKJ3 1217 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 C18orf21Q32NC0 220 aaPredicted RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 ALG1LQ6GMV1 187 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 SPESP1Q6UW49 350 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 EPGNQ6UW88 154 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 NLRP8Q86W28 1048 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 RAB43Q86YS6 212 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 SETD9Q8NE22 299 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 ZHX1-C8orf76Q96EF9 292 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 L3HYPDHQ96EM0 354 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 PEX11GQ96HA9 241 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 ALG2Q9H553 416 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 RPF2Q9H7B2 306 aaKnown RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 GALNT8Q9NY28 637 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 ASNA1O43681 348 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 TNFRSF21O75509 655 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 IL3P08700 152 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 PVRP15151 417 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 OTX2P32243 289 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 MAGEA3P43357 314 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 PRDX1Q06830 199 aaKnown RBP9.42□□□□□ -0.9
LIG3-216ENST00000593099 CAMK1Q14012 370 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 SPANXN4Q5MJ08 99 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 ULK2Q8IYT8 1036 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 OR7G3Q8NG95 312 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 OR4K17Q8NGC6 315 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 OR5AK3PQ8NH89 298 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 FRS2Q8WU20 508 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 ZUFSPQ96AP4 578 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 TXLNGYQ9BZA5 131 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 TAS2R9Q9NYW1 312 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 K7ESM1 405 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 GSSP48637 474 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 UFM1P61960 85 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 PDCD4Q53EL6 469 aaKnown RBP9.42□□□□□ -0.9
LIG3-216ENST00000593099 PYCR3Q53H96 274 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 GALNT18Q6P9A2 607 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 ZNF554Q86TJ5 538 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 CCDC116Q8IYX3 515 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 PJA1Q8NG27 643 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 SLC47A1Q96FL8 570 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 CD180Q99467 661 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 EDEM2Q9BV94 578 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.42□□□□□ -0.9
LIG3-216ENST00000593099 TRPV5Q9NQA5 729 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 KLRF1Q9NZS2 232 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 RBBP6Q7Z6E9 1792 aaKnown RBP9.42□□□□□ -0.9
LIG3-216ENST00000593099 ZNF236Q9UL36 1845 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 TRBC2A0A5B9 178 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 TP53I11O14683 189 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 SRPX2O60687 465 aaPredicted RBP9.42□□□□□ -0.9
LIG3-216ENST00000593099 CLCN7P51798 805 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 EPS8Q12929 822 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 NSDHLQ15738 373 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 GALNT12Q8IXK2 581 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 ZNF786Q8N393 782 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 RBM15BQ8NDT2 890 aaKnown RBP9.42□□□□□ -0.9
LIG3-216ENST00000593099 FAM13CQ8NE31 585 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 OR5L2Q8NGL0 311 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 OR5P2Q8WZ92 322 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 NEIL2Q969S2 332 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 MOAP1Q96BY2 351 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 DEPDC7Q96QD5 511 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 CGREF1Q99674 301 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 GABRG3Q99928 467 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 CRB3Q9BUF7 120 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 METTL7AQ9H8H3 244 aa9.42□□□□□ -0.9
LIG3-216ENST00000593099 EXOSC4Q9NPD3 245 aaKnown RBP9.42□□□□□ -0.9
LIG3-216ENST00000593099 SCDO00767 359 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 CPNE6O95741 557 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 HLA-DQA2P01906 255 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 TCEA1P23193 301 aaKnown RBP9.41□□□□□ -0.9
LIG3-216ENST00000593099 SHC2P98077 582 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 GPR68Q15743 365 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 TLDC1Q6P9B6 456 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 ZNF730Q6ZMV8 503 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 FBXW8Q8N3Y1 598 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 SLC37A2Q8TED4 501 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 PYDC1Q8WXC3 89 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 SLC38A4Q969I6 547 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 TCTN2Q96GX1 697 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 MRGPRX3Q96LB0 322 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 NSMCE3Q96MG7 304 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 SERINC1Q9NRX5 453 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 GIMAP2Q9UG22 337 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 TET1Q8NFU7 2136 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 FZD6O60353 706 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 ENGP17813 658 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 PSMA3P25788 255 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 MTPNP58546 118 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 GPLD1P80108 840 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 XIAPP98170 497 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 LASP1Q14847 261 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms