RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TMEM106CQ9BVX2 250 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 RNF6Q9Y252 685 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 M0R3G1 203 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 TBX6O95947 436 aaPredicted RBP16.15■□□□□ 0.18
USP28-208ENST00000540438 HPRP00739 348 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 SNRPNP63162 240 aaKnown RBP16.15■□□□□ 0.18
USP28-208ENST00000540438 CDK6Q00534 326 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 DNASE1L3Q13609 305 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 MAD2L1BPQ15013 274 aaPredicted RBP16.15■□□□□ 0.18
USP28-208ENST00000540438 WSCD2Q2TBF2 565 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 IQCCQ4KMZ1 466 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 DEF8Q6ZN54 512 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 AMZ2Q86W34 360 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 OR10G2Q8NGC3 310 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 APH1BQ8WW43 257 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 TRMT61BQ9BVS5 477 aaKnown RBP16.15■□□□□ 0.18
USP28-208ENST00000540438 ZBTB20Q9HC78 741 aaPredicted RBP16.15■□□□□ 0.18
USP28-208ENST00000540438 EQTNQ9NQ60 294 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 LYVE1Q9Y5Y7 322 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 MAGEA2P43356 314 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 CLCA4Q14CN2 919 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 CTF1Q16619 201 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 CYP2A13Q16696 494 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 HIST2H2ACQ16777 129 aaPredicted RBP16.15■□□□□ 0.18
USP28-208ENST00000540438 HIST2H2AA3Q6FI13 130 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 HORMAD2Q8N7B1 307 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 XAGE5Q8WWM1 108 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 FERD3LQ96RJ6 166 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 DOHHQ9BU89 302 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 KLHL31Q9H511 634 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 USE1Q9NZ43 259 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 TRPC4Q9UBN4 977 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 BLOC1S6Q9UL45 172 aa16.15■□□□□ 0.18
USP28-208ENST00000540438 FRS3O43559 492 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 TPP2P29144 1249 aaPredicted RBP16.14■□□□□ 0.17
USP28-208ENST00000540438 MAPK12P53778 367 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 EPHA5P54756 1037 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 DCDC1P59894 354 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 KIAA1614Q5VZ46 1190 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 ERN2Q76MJ5 926 aaKnown RBP16.14■□□□□ 0.17
USP28-208ENST00000540438 FNDC8Q8TC99 324 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 MAGIXQ9H6Y5 334 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 PCDHGA6Q9Y5G7 932 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 TRBC2A0A5B9 178 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 SMIM30A4D0T7 59 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 SYNDIG1LA6NDD5 238 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 KIAA0355O15063 1070 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 DNTTP04053 509 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 ADRA2AP08913 450 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 RAB8AP61006 207 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 SMU1Q2TAY7 513 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 GAB4Q2WGN9 574 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 SPIN4Q56A73 249 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 GCNT6Q5T4J0 391 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 MUL1Q969V5 352 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 C12orf66Q96MD2 445 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 TRIT1Q9H3H1 467 aaKnown RBP16.14■□□□□ 0.17
USP28-208ENST00000540438 PRSS16Q9NQE7 514 aa16.14■□□□□ 0.17
USP28-208ENST00000540438 PDZK1P1A8MUH7 402 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 TMPRSS11DO60235 418 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 PAPLNO95428 1278 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 DBTP11182 482 aaKnown RBP16.13■□□□□ 0.17
USP28-208ENST00000540438 LIPAP38571 399 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 SELENOWP63302 87 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 HOXC5Q00444 222 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 KRT33BQ14525 404 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 IGFN1Q86VF2 1251 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 SCN3BQ9NY72 215 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 TMEM247A6NEH6 219 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 B4GALT2O60909 372 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 C9P02748 559 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 CD36P16671 472 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 PRPH2P23942 346 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 SLC35A2P78381 396 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 DOC2BQ14184 412 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 ELAVL3Q14576 367 aaKnown RBP16.13■□□□□ 0.17
USP28-208ENST00000540438 CDKL4Q5MAI5 379 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 TTC23LQ6PF05 361 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 PAGE2Q7Z2X7 111 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 ARMC5Q96C12 935 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 HHIPQ96QV1 700 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 COPS4Q9BT78 406 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 TMEM45AQ9NWC5 275 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 SAGE1Q9NXZ1 904 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 KLHL42Q9P2K6 505 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 SLC16A6O15403 523 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 RGS10O43665 173 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 TFF2Q03403 129 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 DMC1Q14565 340 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 SYPL1Q16563 259 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 NLRP8Q86W28 1048 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 FAM129CQ86XR2 697 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 ETFBKMTQ8IXQ9 262 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 LINC01555Q8NAE3 123 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 RNF217Q8TC41 542 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 CHST8Q9H2A9 424 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 SYNPO2LQ9H987 977 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 TAS2R9Q9NYW1 312 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 GPSM3Q9Y4H4 160 aa16.13■□□□□ 0.17
USP28-208ENST00000540438 DMDP11532 3685 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms