RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 KIAA0355O15063 1070 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 LZTS3O60299 673 aaPredicted RBP20.3■□□□□ 0.84
VPS28-205ENST00000526204 CDK1P06493 297 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 PORP16435 677 aaPredicted RBP20.3■□□□□ 0.84
VPS28-205ENST00000526204 UQCRC2P22695 453 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 XCR1P46094 333 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 RELAQ04206 551 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 LRRC26Q2I0M4 334 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 Q6ZPB1 254 aaPredicted RBP20.3■□□□□ 0.84
VPS28-205ENST00000526204 GRASPQ7Z6J2 395 aaPredicted RBP20.3■□□□□ 0.84
VPS28-205ENST00000526204 MFSD4AQ8N468 514 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 RAD51AP1Q96B01 352 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 SPNS1Q9H2V7 528 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 DAPK2Q9UIK4 370 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 OSGIN1Q9UJX0 560 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 PMF1-BGLAPU3KQ54 211 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 IL3P08700 152 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 KELP23276 732 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 SOAT1P35610 550 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 UGT2B10P36537 528 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 CLK1P49759 484 aaKnown RBP20.3■□□□□ 0.84
VPS28-205ENST00000526204 METAP1P53582 386 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 INAQ16352 499 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 CYP2A13Q16696 494 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 IER5LQ5T953 404 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 BTLAQ7Z6A9 289 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 OR5AK3PQ8NH89 298 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 ARRDC3Q96B67 414 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 NLNQ9BYT8 704 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 ZDHHC5Q9C0B5 715 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 SLIRPQ9GZT3 109 aaKnown RBP20.3■□□□□ 0.84
VPS28-205ENST00000526204 RLIMQ9NVW2 624 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 GIN1Q9NXP7 522 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 WBP11Q9Y2W2 641 aaKnown RBP20.3■□□□□ 0.84
VPS28-205ENST00000526204 HCN4Q9Y3Q4 1203 aa20.3■□□□□ 0.84
VPS28-205ENST00000526204 EDDM13A0A1B0GTR0 161 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 PRAMEF25A6NGN4 478 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 CDH3P22223 829 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 GSSP48637 474 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 IDH2P48735 452 aaKnown RBP20.29■□□□□ 0.84
VPS28-205ENST00000526204 FBXO43Q4G163 708 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 C9orf64Q5T6V5 341 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 NATD1Q8N6N6 113 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 KIAA1958Q8N8K9 716 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 ZNF740Q8NDX6 193 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 ING5Q8WYH8 240 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 GGHQ92820 318 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 NIPSNAP1Q9BPW8 284 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 SLC6A16Q9GZN6 736 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 ACER3Q9NUN7 267 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 ASF1AQ9Y294 204 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 ENPP4Q9Y6X5 453 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 ADRB3P13945 408 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 CEBPBP17676 345 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 RHCEP18577 417 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 C21orf33P30042 268 aaPredicted RBP20.29■□□□□ 0.84
VPS28-205ENST00000526204 LIMS1P48059 325 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 NFE2L1Q14494 772 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 EIF4HQ15056 248 aaKnown RBP20.29■□□□□ 0.84
VPS28-205ENST00000526204 HNRNPA1L2Q32P51 320 aaKnown RBP20.29■□□□□ 0.84
VPS28-205ENST00000526204 FNDC3BQ53EP0 1204 aaKnown RBP20.29■□□□□ 0.84
VPS28-205ENST00000526204 TMEM236Q5W0B7 351 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 SLC9B2Q86UD5 537 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 C12orf40Q86WS4 652 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 FAM129CQ86XR2 697 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 CCDC103Q8IW40 242 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 LMNTD1Q8N9Z9 388 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 POF1BQ8WVV4 589 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 PROX1Q92786 737 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 RPL3LQ92901 407 aaKnown RBP20.29■□□□□ 0.84
VPS28-205ENST00000526204 RAD9AQ99638 391 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 IL23AQ9NPF7 189 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 IMPAD1Q9NX62 359 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 SELENONQ9NZV5 590 aa20.29■□□□□ 0.84
VPS28-205ENST00000526204 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP20.29■□□□□ 0.843e-6■□□□□ 9.1
VPS28-205ENST00000526204 ARRDC5A6NEK1 342 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 AIREO43918 545 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 MMP20O60882 483 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 CCNB2O95067 398 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 GADD45GO95257 159 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 BMP4P12644 408 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 DDX5P17844 614 aaKnown RBP20.28■□□□□ 0.84
VPS28-205ENST00000526204 BMPR1AP36894 532 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 LIPAP38571 399 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 DSTNP60981 165 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 RPA4Q13156 261 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 ELAVL3Q14576 367 aaKnown RBP20.28■□□□□ 0.84
VPS28-205ENST00000526204 TIGD6Q17RP2 521 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 REEP3Q6NUK4 255 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 LRRC3BQ96PB8 259 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 OR52A5Q9H2C5 316 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 SPATA7Q9P0W8 599 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 TAAR2Q9P1P5 351 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 RAB23Q9ULC3 237 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 PCM1Q15154 2024 aa20.28■□□□□ 0.84
VPS28-205ENST00000526204 PRAMEF33A0A0G2JMD5 474 aa20.27■□□□□ 0.84
VPS28-205ENST00000526204 PRAMEF10O60809 474 aa20.27■□□□□ 0.84
VPS28-205ENST00000526204 SEMA3DO95025 777 aa20.27■□□□□ 0.84
VPS28-205ENST00000526204 GABRB1P18505 474 aa20.27■□□□□ 0.84
VPS28-205ENST00000526204 CTNNB1P35222 781 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms