RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	MOGAT2	Q3SYC2	334 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	FASTKD1	Q53R41	847 aa	Known RBP	3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	PLBD1	Q6P4A8	553 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	LCLAT1	Q6UWP7	414 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	NLRP14	Q86W24	1093 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	ZFAND4	Q86XD8	727 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	CNTN4	Q8IWV2	1026 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	THEM5	Q8N1Q8	247 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	ELMOD1	Q8N336	334 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	SLC43A2	Q8N370	569 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	RPLP0P6	Q8NHW5	317 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	CNRIP1	Q96F85	164 aa	Predicted RBP	3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	EEF2KMT	Q96G04	330 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	AGAP4	Q96P64	663 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	SYT11	Q9BT88	431 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	DNAJC11	Q9NVH1	559 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	TEX10	Q9NXF1	929 aa	Predicted RBP	3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	KLK11	Q9UBX7	282 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	ERRFI1	Q9UJM3	462 aa	Predicted RBP	3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	PILRA	Q9UKJ1	303 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	ERVK-19	Q9WJR5	959 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	MRPS18C	Q9Y3D5	142 aa	Known RBP	3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	ETV7	Q9Y603	341 aa		3.22	□□□□□ -1.89
PTCD3-209	ENST00000472044	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	C5orf51	A6NDU8	294 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	DDX39A	O00148	427 aa	Known RBP	3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	TRAFD1	O14545	582 aa	Predicted RBP	3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	SIGLEC5	O15389	551 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	TNFSF12	O43508	249 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	TRIM49	P0CI25	452 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	TRIM49C	P0CI26	452 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	HLA-DPA1	P20036	260 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	PDHA2	P29803	388 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	CLK1	P49759	484 aa	Known RBP	3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	ERVK11-1	P61568	191 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	BTG1	P62324	171 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	ZNF177	Q13360	481 aa	Predicted RBP	3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	LY6D	Q14210	128 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	NECTIN1	Q15223	517 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	SPHAR	Q15513	63 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	FAM189A2	Q15884	450 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	C3AR1	Q16581	482 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	LRRTM1	Q86UE6	522 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	SIDT2	Q8NBJ9	832 aa	Known RBP	3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	CLEC1A	Q8NC01	280 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	OR9Q2	Q8NGE9	314 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	SPATA3	Q8NHX4	192 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	C11orf45	Q8TAV5	145 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	RNASE8	Q8TDE3	154 aa	Known RBP	3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	GANC	Q8TET4	914 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	SMPDL3A	Q92484	453 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	SNX21	Q969T3	373 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	C11orf52	Q96A22	123 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	ATP6V0B	Q99437	205 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	SSX3	Q99909	188 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	DDX50	Q9BQ39	737 aa	Known RBP	3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	PINK1	Q9BXM7	581 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	NUSAP1	Q9BXS6	441 aa	Known RBP	3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	MTIF3	Q9H2K0	278 aa	Known RBP	3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	PARL	Q9H300	379 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	CYP39A1	Q9NYL5	469 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	PSORS1C1	Q9UIG5	152 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	KCNK6	Q9Y257	313 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	KNSTRN	Q9Y448	316 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	SNX5	Q9Y5X3	404 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	ZHX2	Q9Y6X8	837 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	CACNA1F	O60840	1977 aa		3.21	□□□□□ -1.9
PTCD3-209	ENST00000472044	IGHV3-38	A0A0C4DH36	116 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	NDUFAF8	A1L188	74 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	SLC15A5	A6NIM6	579 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044		H7C423	109 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	SOCS3	O14543	225 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	TFEC	O14948	347 aa	Predicted RBP	3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	KERA	O60938	352 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	CPNE6	O95741	557 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	EPO	P01588	193 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	RPLP0	P05388	317 aa	Known RBP	3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	MMP10	P09238	476 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	SBK2	P0C263	348 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	SKIL	P12757	684 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	CPA3	P15088	417 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	DPEP1	P16444	411 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	GJB2	P29033	226 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	VEGFC	P49767	419 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	NDST2	P52849	883 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	BACE1	P56817	501 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	EVC	P57679	992 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	KRTAP10-9	P60411	292 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	UBXN1	Q04323	297 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	LCP2	Q13094	533 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	PDE7A	Q13946	482 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	MEF2D	Q14814	521 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	HFE	Q30201	348 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	IFI44L	Q53G44	452 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	SNRNP48	Q6IEG0	339 aa	Known RBP	3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	GDPGP1	Q6ZNW5	385 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	KRTAP7-1	Q8IUC3	87 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	METTL4	Q8N3J2	472 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	SFRP1	Q8N474	314 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	TRPV3	Q8NET8	790 aa		3.2	□□□□□ -1.9

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