RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TMEM102Q8N9M5 508 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-208ENST00000437607 OR2A1Q8NGT9 310 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 RFWD2Q8NHY2 731 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PRR7Q8TB68 274 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 C10orf82Q8WW14 230 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 SELENOMQ8WWX9 145 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 WDR34Q96EX3 536 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PPP1R36Q96LQ0 422 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 TRAPPC9Q96Q05 1148 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 CCT7Q99832 543 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PLCD4Q9BRC7 762 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PITHD1Q9GZP4 211 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-208ENST00000437607 KLHL25Q9H0H3 589 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 FANCEQ9HB96 536 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 SLC6A20Q9NP91 592 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 SLAMF7Q9NQ25 335 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 RIC8BQ9NVN3 520 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 GPR83Q9NYM4 423 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 ERRFI1Q9UJM3 462 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-208ENST00000437607 TIMM22Q9Y584 194 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PCDHGA11Q9Y5H2 935 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 DCHS2Q6V1P9 2916 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 MANBAO00462 879 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 PRICKLE3O43900 615 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-208ENST00000437607 CBX6O95503 412 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 DDAH2O95865 285 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 LDLRP01130 860 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 CD22P20273 847 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 MAGP20916 626 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 SERPINB1P30740 379 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 CASP2P42575 452 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 MEF2AQ02078 507 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-208ENST00000437607 BTKQ06187 659 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 DDX39BQ13838 428 aaKnown RBP11.53□□□□□ -0.56
PTPRF-208ENST00000437607 E2F2Q14209 437 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 NR6A1Q15406 480 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 TCHHL1Q5QJ38 904 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-208ENST00000437607 FRG2Q64ET8 278 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 NXNQ6DKJ4 435 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 HPS6Q86YV9 775 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 CCDC197Q8NCU1 140 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 ABHD11Q8NFV4 315 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 TTLQ8NG68 377 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 STON2Q8WXE9 905 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 SNRNP40Q96DI7 357 aaKnown RBP11.53□□□□□ -0.56
PTPRF-208ENST00000437607 RILPQ96NA2 401 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 FRG2BQ96QU4 278 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 OR2A14Q96R47 310 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 DPH7Q9BTV6 452 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 MEAF6Q9HAF1 191 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 ARL2BPQ9Y2Y0 163 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 DNAJC15Q9Y5T4 150 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 HEATR5BQ9P2D3 2071 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 CPAMD8Q8IZJ3 1885 aa11.53□□□□□ -0.56
PTPRF-208ENST00000437607 PDZD2O15018 2839 aa11.52□□□□□ -0.56
PTPRF-208ENST00000437607 OTOGQ6ZRI0 2925 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 TRBC2A0A5B9 178 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 H0YIV9 168 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 H7BY64 318 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 MASP2O00187 686 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 HAT1O14929 419 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 ZNF749O43361 778 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 RGS14O43566 566 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 PRAMEF4O60810 478 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 ULK1O75385 1050 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 WFS1O76024 890 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 JUNP05412 331 aaKnown RBP11.52□□□□□ -0.57
PTPRF-208ENST00000437607 CTSBP07858 339 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 EZRP15311 586 aaKnown RBP11.52□□□□□ -0.57
PTPRF-208ENST00000437607 GSTM2P28161 218 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 SERPINB3P29508 390 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 OTX2P32243 289 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 DCTP40126 519 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 GABRA4P48169 554 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 RRADP55042 308 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 FOXL2P58012 376 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 CSNK1G2P78368 415 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 ZNF33BQ06732 778 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 CSTF3Q12996 717 aaKnown RBP11.52□□□□□ -0.57
PTPRF-208ENST00000437607 RBBP5Q15291 538 aaKnown RBP11.52□□□□□ -0.57
PTPRF-208ENST00000437607 SGO1Q5FBB7 561 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 XKR7Q5GH72 579 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 CRB2Q5IJ48 1285 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 PRAMEF9Q5VWM5 478 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 FAM219BQ5XKK7 198 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 TMIGD1Q6UXZ0 262 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 RNF165Q6ZSG1 346 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 MAMDC2Q7Z304 686 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-208ENST00000437607 MAVSQ7Z434 540 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 FAM20CQ8IXL6 584 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.52□□□□□ -0.57
PTPRF-208ENST00000437607 C19orf47Q8N9M1 422 aaKnown RBP11.52□□□□□ -0.57
PTPRF-208ENST00000437607 TUBGCP3Q96CW5 907 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 PRAP1Q96NZ9 151 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 HBEGFQ99075 208 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 SPNS1Q9H2V7 528 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 FAM60AQ9NP50 221 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 TCF7L2Q9NQB0 619 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 TMEM184CQ9NVA4 438 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 ASF1BQ9NVP2 202 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms