RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CHDHQ8NE62 594 aaPredicted RBP10.16□□□□□ -0.78
CUX1-221ENST00000622516 NFKBIDQ8NI38 313 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 DTNBP1Q96EV8 351 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 INSM2Q96T92 566 aaPredicted RBP10.16□□□□□ -0.78
CUX1-221ENST00000622516 CHST8Q9H2A9 424 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 BTNL2Q9UIR0 455 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 C3orf18Q9UK00 162 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 GPSM3Q9Y4H4 160 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 TESMINQ9Y4I5 508 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 TRBV23OR9-2A0A075B6M9 112 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 TMEM229AB2RXF0 380 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 M0QX08 132 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 SUV39H1O43463 412 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 OR1F1O43749 312 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 ATE1O95260 518 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 CRHBPP24387 322 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 FMO3P31513 532 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 HLCSP50747 726 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 ZNF33BQ06732 778 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 PCDH1Q08174 1060 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 SMN1Q16637 294 aaKnown RBP10.16□□□□□ -0.78
CUX1-221ENST00000622516 ZBED5Q49AG3 693 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 ANXA8L1Q5VT79 327 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 TTC23Q5W5X9 447 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 BORAQ6PGQ7 559 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 RD3Q7Z3Z2 195 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 PARP8Q8N3A8 854 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 METTL4Q8N3J2 472 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 WDR34Q96EX3 536 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 DGCR6LQ9BY27 220 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 RSPH9Q9H1X1 276 aaPredicted RBP10.16□□□□□ -0.78
CUX1-221ENST00000622516 RASSF1Q9NS23 344 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 TAAR2Q9P1P5 351 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 RPS6KA6Q9UK32 745 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 COL4A3Q01955 1670 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 TBC1D3DA0A087WVF3 549 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TBC1D3IA0A087WXS9 549 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TBC1D3EA0A087X179 549 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TBC1D3KA0A087X1G2 549 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 A0A1W2PQU0 124 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 A0A1W2PRB8 838 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TBC1D3FA6NER0 549 aaPredicted RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 TRIM64A6NGJ6 449 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 GLOD5A6NK44 160 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TBC1D3LB9A6J9 549 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 J3KTA2 159 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 K7EQS6 105 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 RNASET2O00584 256 aaKnown RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 PRKRAO75569 313 aaKnown RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 POU2F2P09086 479 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TBC1D3HP0C7X1 549 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 MATN1P21941 496 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 ISL1P61371 349 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 KCNJ10P78508 379 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 HYAL1Q12794 435 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 DYNC1I2Q13409 638 aaKnown RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 CLCA4Q14CN2 919 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 C6orf141Q5SZD1 244 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TBC1D3GQ6DHY5 549 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 FAM71E1Q6IPT2 247 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TBC1D3CQ6IPX1 549 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 SHQ1Q6PI26 577 aaKnown RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 UNC5DQ6UXZ4 953 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 EIF3MQ7L2H7 374 aaKnown RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 SLC9B2Q86UD5 537 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 HIPK1Q86Z02 1210 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.15□□□□□ -0.784e-7■■■□□ 15
CUX1-221ENST00000622516 TBC1D3Q8IZP1 549 aaPredicted RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 PJA1Q8NG27 643 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 RAB7BQ96AH8 199 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 OTUB1Q96FW1 271 aaPredicted RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 SLAMF7Q9NQ25 335 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 PAK1IP1Q9NWT1 392 aaPredicted RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 THUMPD1Q9NXG2 353 aaKnown RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 SH3GLB1Q9Y371 365 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 SCN2AQ99250 2005 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 COL6A3P12111 3177 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 PDZK1P1A8MUH7 402 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 BCKDKO14874 412 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 HPRP00739 348 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 HTR1AP08908 422 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 NAT2P11245 290 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 LAMP2P13473 410 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 PTX3P26022 381 aaPredicted RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 RRM2P31350 389 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 SLC19A1P41440 591 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 STT3AP46977 705 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 DGKEP52429 567 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 MAPK12P53778 367 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 CLDN2P57739 230 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 SGCGQ13326 291 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 KRT33BQ14525 404 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 CYP2A13Q16696 494 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 ITPRIPL2Q3MIP1 535 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 LAIR1Q6GTX8 287 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TNFAIP8L2Q6P589 184 aaPredicted RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 SZRD1Q7Z422 152 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 MENTQ9BUN1 341 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TRMT61BQ9BVS5 477 aaKnown RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 ASPSCR1Q9BZE9 553 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms