RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PSORS1C1Q9UIG5 152 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 XIRP2A4UGR9 3374 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 EFCAB10A6NFE3 127 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 TMEM88BA6NKF7 163 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 TSPAN6O43657 245 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 CPNE3O75131 537 aaKnown RBP14.66□□□□□ -0.06
UPF1-204ENST00000596842 C8GP07360 202 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 HNF4AP41235 474 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 ARMC4Q5T2S8 1044 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 PXDC1Q5TGL8 231 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 C11orf96Q7Z7L8 435 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 NPAS4Q8IUM7 802 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 DNAJB8Q8NHS0 232 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 CLP1Q92989 425 aaKnown RBP14.66□□□□□ -0.06
UPF1-204ENST00000596842 MGLLQ99685 303 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 C5AR2Q9P296 337 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 IFT52Q9Y366 437 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 USP34Q70CQ2 3546 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 ARHGEF33A8MVX0 844 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 INPPL1O15357 1258 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 RGS6P49758 472 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 IFI44LQ53G44 452 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 RPS26P11Q5JNZ5 115 aaPredicted RBP14.65□□□□□ -0.06
UPF1-204ENST00000596842 MEX3DQ86XN8 651 aaKnown RBP14.65□□□□□ -0.06
UPF1-204ENST00000596842 TMEM169Q96HH4 297 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 C7orf34Q96L11 122 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 FAM120CQ9NX05 1096 aaKnown RBP14.65□□□□□ -0.06
UPF1-204ENST00000596842 ZNF221Q9UK13 617 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 PCDHGB6Q9Y5F9 930 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 ADAMDEC1O15204 470 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 ZW10O43264 779 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 GADD45GO95257 159 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 CDK1P06493 297 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 PDHA2P29803 388 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 GGT2P36268 569 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 ZNF385BQ569K4 471 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 ELMOD1Q8N336 334 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 ASZ1Q8WWH4 475 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 RIOK2Q9BVS4 552 aaKnown RBP14.65□□□□□ -0.06
UPF1-204ENST00000596842 DOCK6Q96HP0 2047 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 A0A1W2PRU2 124 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 CLDN24A6NM45 220 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 NEDD8-MDP1E9PL57 170 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 SCAMP2O15127 329 aaKnown RBP14.65□□□□□ -0.06
UPF1-204ENST00000596842 POLR2EP19388 210 aaKnown RBP14.65□□□□□ -0.06
UPF1-204ENST00000596842 PTGER1P34995 402 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 CRYBA2P53672 197 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 NKX3-2P78367 333 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 DEF8Q6ZN54 512 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 PLPP6Q8IY26 295 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 MINDY2Q8NBR6 621 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 RAB8BQ92930 207 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 SCRN2Q96FV2 425 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 CWH43Q9H720 699 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 PAQR5Q9NXK6 330 aaPredicted RBP14.65□□□□□ -0.06
UPF1-204ENST00000596842 OR51B4Q9Y5P0 310 aa14.65□□□□□ -0.06
UPF1-204ENST00000596842 SCN2BO60939 215 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 SRCP12931 536 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 SELPP16109 830 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 TNNI3P19429 210 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 CNR2P34972 360 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 PIK3CBP42338 1070 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 EPHB3P54753 998 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 GDPD3Q7L5L3 318 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 SLC38A6Q8IZM9 456 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 OR52E4Q8NGH9 312 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 CYB5D2Q8WUJ1 264 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 UBTD2Q8WUN7 234 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 ZNF486Q96H40 463 aaPredicted RBP14.64□□□□□ -0.07
UPF1-204ENST00000596842 FAM83DQ9H4H8 585 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 MIEF1Q9NQG6 463 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 HSPE1-MOB4S4R3N1 261 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 KCNE1BA0A087WTH5 132 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 ANKDD1BA6NHY2 528 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 KLK1P06870 262 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 CSNK1DP48730 415 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 CTSCP53634 463 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 OR2B6P58173 313 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 CDC42P60953 191 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 SELENOWP63302 87 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 PTGES3Q15185 160 aaKnown RBP14.64□□□□□ -0.07
UPF1-204ENST00000596842 TCTN1Q2MV58 587 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 LRIT3Q3SXY7 679 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 BCL7AQ4VC05 210 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 ZMAT1Q5H9K5 638 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 OR7G3Q8NG95 312 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 SIPA1Q96FS4 1042 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 MAT2BQ9NZL9 334 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 ZNF197O14709 1029 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 OR10H3O60404 316 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 CSF2P04141 144 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 SERPIND1P05546 499 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 TAS2R50P59544 299 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 GNG2P59768 71 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 SLC46A3Q7Z3Q1 461 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 NEIL2Q969S2 332 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 COL21A1Q96P44 957 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 NEDD4LQ96PU5 975 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 TRNT1Q96Q11 434 aaKnown RBP14.64□□□□□ -0.07
UPF1-204ENST00000596842 WRAP53Q9BUR4 548 aaKnown RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms