RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 HIST1H1TP22492 207 aaPredicted RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 RPL10P27635 214 aaKnown RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 MAT2AP31153 395 aaKnown RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 IFNA8P32881 189 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 ACSL1P33121 698 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 MPIP34949 423 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 FRKP42685 505 aaPredicted RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 MAGEA2P43356 314 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 PRIM2P49643 509 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 ALDH3A2P51648 485 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 EPHA4P54764 986 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 AQP4P55087 323 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 TAS2R50P59544 299 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 HNRNPKP61978 463 aaKnown RBP eCLIP7.18□□□□□ -1.26
VPS39-204ENST00000561818 PPP2CBP62714 309 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 PPP2CAP67775 309 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 TUBA4AP68366 448 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 RAE1P78406 368 aaKnown RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 FOLH1Q04609 750 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 TP53BP2Q13625 1128 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 PDK3Q15120 406 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 RGNQ15493 299 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 CCSMST1Q4G0I0 132 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 TJAP1Q5JTD0 557 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 WDR45BQ5MNZ6 344 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 PRAMEF9Q5VWM5 478 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 OR4F3Q6IEY1 312 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 ZNF425Q6IV72 752 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 IYDQ6PHW0 289 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 XKR5Q6UX68 686 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 CCDC80Q76M96 950 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 EIF3MQ7L2H7 374 aaKnown RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 ARMCX6Q7L4S7 300 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 GPR155Q7Z3F1 870 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 PIWIL3Q7Z3Z3 882 aaKnown RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 SPRED1Q7Z699 444 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 RABEPKQ7Z6M1 372 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 CACUL1Q86Y37 369 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 LINC00471Q8N535 108 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 KRTCAP2Q8N6L1 136 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 FAM47BQ8NA70 645 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 SETD9Q8NE22 299 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 GPR156Q8NFN8 814 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 OR56A1Q8NGH5 318 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 OR5K1Q8NHB7 308 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 CDC26Q8NHZ8 85 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 ZFP90Q8TF47 636 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 OR1E3Q8WZA6 343 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 GATA6Q92908 595 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 MARVELD3Q96A59 401 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 BIRC7Q96CA5 298 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 TOE1Q96GM8 510 aaKnown RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 TRAPPC9Q96Q05 1148 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 SERINC2Q96SA4 455 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 ZNF607Q96SK3 696 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 SLC35A5Q9BS91 424 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 NPLQ9BXD5 320 aaPredicted RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 EBPLQ9BY08 206 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 MFRPQ9BY79 579 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 MRPS26Q9BYN8 205 aaKnown RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 TTYH1Q9H313 450 aaPredicted RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 RPF2Q9H7B2 306 aaKnown RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 ZNF696Q9H7X3 374 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 C3orf14Q9HBI5 128 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 LYRM4Q9HD34 91 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 TM9SF3Q9HD45 589 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 LTB4R2Q9NPC1 389 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 IL1RAPQ9NPH3 570 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 DDX18Q9NVP1 670 aaKnown RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 SLC25A37Q9NYZ2 338 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 USE1Q9NZ43 259 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 P2RX2Q9UBL9 471 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 KLF15Q9UIH9 416 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 PADI2Q9Y2J8 665 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 PCDHGB3Q9Y5G1 929 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 PCDHGA4Q9Y5G9 962 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 AP4B1Q9Y6B7 739 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 ZNF780BQ9Y6R6 833 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 HSPE1-MOB4S4R3N1 261 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 A0A0A6YYD5 115 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 A0A0J9YY10 115 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 OR2A25A4D2G3 310 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 LRIT2A6NDA9 550 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ARRDC5A6NEK1 342 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 POM121BA6NF01 834 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 TTC36A6NLP5 189 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ISM1B1AKI9 464 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 C5orf58C9J3I9 102 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 G3V2T6 193 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 H7BY64 318 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 SH3BP5O60239 455 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 SRPX2O60687 465 aaPredicted RBP7.17□□□□□ -1.26
VPS39-204ENST00000561818 MRPS14O60783 128 aaKnown RBP7.17□□□□□ -1.26
VPS39-204ENST00000561818 SCN2BO60939 215 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 E2F6O75461 281 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 DNAJB5O75953 348 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 AK1P00568 194 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 CST1P01037 141 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 FABP3P05413 133 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 THEGLP0DJG4 465 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms