RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 BAG5Q9UL15 447 aa5.34□□□□□ -1.55
PCF11-205ENST00000530906 VPS4AQ9UN37 437 aa5.34□□□□□ -1.55
PCF11-205ENST00000530906 PCDHGB4Q9UN71 923 aa5.34□□□□□ -1.55
PCF11-205ENST00000530906 HSPE1-MOB4S4R3N1 261 aa5.34□□□□□ -1.55
PCF11-205ENST00000530906 CKAP5Q14008 2032 aa5.34□□□□□ -1.55
PCF11-205ENST00000530906 LRRK1Q38SD2 2015 aa5.34□□□□□ -1.55
PCF11-205ENST00000530906 TCF20Q9UGU0 1960 aaKnown RBP5.34□□□□□ -1.55
PCF11-205ENST00000530906 CROCCQ5TZA2 2017 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 ATG2AQ2TAZ0 1938 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TMEM265A0A087WTH1 108 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 GNG14A0A1W2PPG7 69 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 PIPSLA2A3N6 862 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 A8MVJ9 347 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 G3V2T6 193 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CACNB4O00305 520 aaPredicted RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 UPK1AO00322 258 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 DLGAP1O14490 977 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 GNGT2O14610 69 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 SLC16A6O15403 523 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 PCDH7O60245 1069 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TPST1O60507 370 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 MRPS14O60783 128 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 KRT75O95678 551 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CST1P01037 141 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 EPHX1P07099 455 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 HOXC4P09017 264 aaPredicted RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 SLC35G4P0C7Q5 338 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 ZNF8P17098 575 aaPredicted RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 PAX7P23759 505 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TACR1P25103 407 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CALRP27797 417 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 GSTT1P30711 240 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 PCGF2P35227 344 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TRIM23P36406 574 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 IL12RB1P42701 662 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 MTHFRP42898 656 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 BDKRB1P46663 353 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 SLC6A11P48066 632 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 NEK2P51955 445 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 LBX1P52954 281 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 WNT3P56703 355 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 GABARAPL2P60520 117 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TRA2BP62995 288 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 RPS21P63220 83 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 PHC1P78364 1004 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 PPP2R2BQ00005 443 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CDK3Q00526 305 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CNTN1Q12860 1018 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TUBA3CQ13748 450 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 SELPLGQ14242 412 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 SLBPQ14493 270 aaKnown RBP eCLIP5.33□□□□□ -1.56
PCF11-205ENST00000530906 STARD3Q14849 445 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 PON2Q15165 354 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CST6Q15828 149 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 PGS1Q32NB8 556 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CNPY1Q3B7I2 92 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CYBRD1Q53TN4 286 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 ATAT1Q5SQI0 421 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CCNYL2Q5T2Q4 361 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 AGBL4Q5VU57 503 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 FOXB2Q5VYV0 432 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 METRNLQ641Q3 311 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 OR4F3Q6IEY1 312 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 SDE2Q6IQ49 451 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CES5AQ6NT32 575 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 ANKRD54Q6NXT1 300 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TRIM40Q6P9F5 258 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 IYDQ6PHW0 289 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 SHQ1Q6PI26 577 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 VITQ6UXI7 678 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TMIGD1Q6UXZ0 262 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 B3GNT6Q6ZMB0 384 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 EIF3MQ7L2H7 374 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 C11orf96Q7Z7L8 435 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 ADGRD2Q7Z7M1 963 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TMPRSS11BQ86T26 416 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 C17orf64Q86WR6 236 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 ZNF547Q8IVP9 402 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 CLEC4FQ8N1N0 589 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TBC1D19Q8N5T2 526 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 C1orf52Q8N6N3 182 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 METTL25Q8N6Q8 603 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 DNAJC5GQ8N7S2 189 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 C11orf65Q8NCR3 313 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 SETD9Q8NE22 299 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 ZNF555Q8NEP9 628 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 ZNF420Q8TAQ5 688 aaPredicted RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.33□□□□□ -1.56
PCF11-205ENST00000530906 MAGEE2Q8TD90 523 aaPredicted RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 SNX19Q92543 992 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 TFGQ92734 400 aaPredicted RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 HDAC2Q92769 488 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 GFM2Q969S9 779 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 TMBIM1Q969X1 311 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 MTFMTQ96DP5 389 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 VPS50Q96JG6 964 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 MAGED4Q96JG8 741 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 RIPOR3Q96MK2 946 aa5.33□□□□□ -1.56
PCF11-205ENST00000530906 MTERF1Q99551 399 aaKnown RBP5.33□□□□□ -1.56
PCF11-205ENST00000530906 SEPHS2Q99611 448 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms