RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NT5DC2Q9H857 520 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 IGSF5Q9NSI5 407 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 DNAJC11Q9NVH1 559 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 UTP11Q9Y3A2 253 aaKnown RBP13.22□□□□□ -0.29
UPF3A-204ENST00000475218 STSP08842 583 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 RNH1P13489 461 aaKnown RBP13.22□□□□□ -0.29
UPF3A-204ENST00000475218 ATP6V0D1P61421 351 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 BTN3A2P78410 334 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 ILF2Q12905 390 aaKnown RBP13.22□□□□□ -0.29
UPF3A-204ENST00000475218 DOC2AQ14183 400 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 E2F2Q14209 437 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 ELOAQ14241 798 aaKnown RBP13.22□□□□□ -0.29
UPF3A-204ENST00000475218 C4orf17Q53FE4 359 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 GRTP1Q5TC63 336 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 ZNF227Q86WZ6 799 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 CTAGE3PQ8IX95 158 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 GAL3ST3Q96A11 431 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 ZNF354BQ96LW1 612 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 C5orf34Q96MH7 638 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 PTCHD1Q96NR3 888 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 ATOH8Q96SQ7 321 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 LRRC1Q9BTT6 524 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 RHBGQ9H310 441 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 EHD1Q9H4M9 534 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 CLK4Q9HAZ1 481 aaKnown RBP13.22□□□□□ -0.29
UPF3A-204ENST00000475218 WWOXQ9NZC7 414 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 GPRC5BQ9NZH0 403 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 LRRTM2O43300 516 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 PRMT3O60678 531 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 NEURL1O76050 574 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 MTHFD2P13995 350 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 JAK1P23458 1154 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 PPP2R1BP30154 601 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 CAV1Q03135 178 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 ACTN3Q08043 901 aaPredicted RBP13.21□□□□□ -0.29
UPF3A-204ENST00000475218 SULT1C3Q6IMI6 304 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 NIPAL1Q6NVV3 410 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 MAMDC2Q7Z304 686 aaPredicted RBP13.21□□□□□ -0.29
UPF3A-204ENST00000475218 UBE3DQ7Z6J8 389 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 SCUBE1Q8IWY4 988 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 CENPLQ8N0S6 344 aaPredicted RBP13.21□□□□□ -0.29
UPF3A-204ENST00000475218 TCAIMQ8N3R3 496 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 RAB17Q9H0T7 212 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 ALG9Q9H6U8 611 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 PRDM9Q9NQV7 894 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 ABI3Q9P2A4 366 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 TXNDC16Q9P2K2 825 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 TEKT2Q9UIF3 430 aa13.21□□□□□ -0.29
UPF3A-204ENST00000475218 ZNF223Q9UK11 482 aaPredicted RBP13.21□□□□□ -0.29
UPF3A-204ENST00000475218 SAGE2PA6NJ88 616 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 ERI3O43414 337 aaKnown RBP13.2□□□□□ -0.3
UPF3A-204ENST00000475218 CLEC3AO75596 197 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 STK16O75716 305 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 UQCRHP07919 91 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 SPRP35270 261 aaPredicted RBP13.2□□□□□ -0.3
UPF3A-204ENST00000475218 IRF9Q00978 393 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 MEP1AQ16819 746 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 ZNF766Q5HY98 468 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 SPINK14Q6IE38 97 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 ARMC10Q8N2F6 343 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 APCDD1LQ8NCL9 501 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 EXT2Q93063 718 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 SCMH1Q96GD3 660 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 URADA6NGE7 173 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 GABRR3A8MPY1 467 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 CYR61O00622 381 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 H2AFYO75367 372 aaKnown RBP13.2□□□□□ -0.3
UPF3A-204ENST00000475218 RASAL1O95294 804 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 TFEBP19484 476 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 TPP2P29144 1249 aaPredicted RBP13.2□□□□□ -0.3
UPF3A-204ENST00000475218 STXBP1P61764 594 aaKnown RBP13.2□□□□□ -0.3
UPF3A-204ENST00000475218 SKP1P63208 163 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 BMPR2Q13873 1038 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 PDK4Q16654 411 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 C1QL3Q5VWW1 255 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 ZNF787Q6DD87 383 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 ABHD17CQ6PCB6 329 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 CYP4X1Q8N118 509 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 OR2L5Q8NG80 312 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 CSF3RQ99062 836 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 CD244Q9BZW8 370 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 PITHD1Q9GZP4 211 aaPredicted RBP13.2□□□□□ -0.3
UPF3A-204ENST00000475218 CDCP1Q9H5V8 836 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 PRDM7Q9NQW5 492 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 CD274Q9NZQ7 290 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 RNF112Q9ULX5 631 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 PCDHGB6Q9Y5F9 930 aa13.2□□□□□ -0.3
UPF3A-204ENST00000475218 NOTCH2Q04721 2471 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 FBN2P35556 2912 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 A8MUA0 341 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 UBXN8O00124 270 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 DYNC1I1O14576 645 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 CERS1P27544 350 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 GSTM2P28161 218 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 STX2P32856 288 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 CASP2P42575 452 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 GPR143P51810 404 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 PLA2G16P53816 162 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 SLMAPQ14BN4 828 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 OR1C1Q15619 314 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms