RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 C1GALT1C1LP0DN25 315 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 PORP16435 677 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-205ENST00000392004 PPP2R1BP30154 601 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 PRKAA2P54646 552 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 FOXA1P55317 472 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 PSME3P61289 254 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 NR0B2Q15466 257 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 C5orf22Q49AR2 442 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 Q6ZNX1 250 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 TMEM26Q6ZUK4 368 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 KDM1BQ8NB78 822 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 OR10Q1Q8NGQ4 319 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ZSCAN32Q9NX65 697 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 IGF2RP11717 2491 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 PRSS51A0A1B0GVH4 220 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 OR2W5A6NFC9 320 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 SGK494L7N484 410 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 FZD6O60353 706 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 C1orf105O95561 183 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 CCNYL3P0C7X3 344 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 CBSLP0DN79 551 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 CBSP35520 551 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 SLC16A1P53985 500 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 CDH15P55291 814 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ZNF155Q12901 538 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-205ENST00000392004 LRP8Q14114 963 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ZNF267Q14586 743 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ZNF678Q5SXM1 525 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 LRTOMTQ8WZ04 291 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 TRIM45Q9H8W5 580 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ZCCHC3Q9NUD5 404 aaKnown RBP9.87□□□□□ -0.83
COL6A3-205ENST00000392004 TMEM74BQ9NUR3 256 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ATAD3AQ9NVI7 634 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 TRNAU1APQ9NX07 287 aaKnown RBP9.87□□□□□ -0.83
COL6A3-205ENST00000392004 KIF17Q9P2E2 1029 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ANKMY1Q9P2S6 941 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 CROTQ9UKG9 612 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 NEU3Q9UQ49 428 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 HEMK1Q9Y5R4 338 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-205ENST00000392004 EFCAB7A8K855 629 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 H0YJX3 145 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 HRO43593 1189 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 CA5AP35218 305 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ACADVLP49748 655 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 NCBP2P52298 156 aaKnown RBP eCLIP9.87□□□□□ -0.83
COL6A3-205ENST00000392004 SHC2P98077 582 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ATP1A4Q13733 1029 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ABRAXAS2Q15018 415 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ZNHIT3Q15649 155 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-205ENST00000392004 UNC50Q53HI1 259 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 OR4F3Q6IEY1 312 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 BNIPLQ7Z465 357 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 TECPR1Q7Z6L1 1165 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ZNF548Q8NEK5 533 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-205ENST00000392004 COQ10AQ96MF6 247 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 OR6C1Q96RD1 312 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 CIB1Q99828 191 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 EHD1Q9H4M9 534 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 PLAC1Q9HBJ0 212 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 MKL2Q9ULH7 1088 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 SLCO1B1Q9Y6L6 691 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 ARID2Q68CP9 1835 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 MDC1Q14676 2089 aaKnown RBP9.86□□□□□ -0.83
COL6A3-205ENST00000392004 ZNF195O14628 629 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 NME6O75414 186 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-205ENST00000392004 RDH16O75452 317 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 REM1O75628 298 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 PDYNP01213 254 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 G6PDP11413 515 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 YAP1P46937 504 aaKnown RBP9.86□□□□□ -0.83
COL6A3-205ENST00000392004 HK2P52789 917 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 SH3BP2P78314 561 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 HERC3Q15034 1050 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 ZC3H12BQ5HYM0 836 aaKnown RBP9.86□□□□□ -0.83
COL6A3-205ENST00000392004 CHERPQ8IWX8 916 aaKnown RBP9.86□□□□□ -0.83
COL6A3-205ENST00000392004 CLEC4FQ8N1N0 589 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 ADAMTS15Q8TE58 950 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 FGF21Q9NSA1 209 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 VPS4AQ9UN37 437 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 SPTY2D1-AS1A0A0U1RR47 76 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 TNFRSF10AO00220 468 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 SPINT1O43278 529 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 SNRPB2P08579 225 aaKnown RBP9.86□□□□□ -0.83
COL6A3-205ENST00000392004 ZNF12P17014 697 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 ALDH3B2P48448 385 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 TXNL4AP83876 142 aaKnown RBP9.86□□□□□ -0.83
COL6A3-205ENST00000392004 GPR19Q15760 415 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 ZBED5Q49AG3 693 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 GUSBP11Q6P575 273 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 TMEM207Q6UWW9 146 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 ASPGQ86U10 573 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 NUDT13Q86X67 352 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 OXR1Q8N573 874 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 TMEM105Q8N8V8 129 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 GPR151Q8TDV0 419 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 KIAA1143Q96AT1 154 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-205ENST00000392004 RGMAQ96B86 450 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 AURKBQ96GD4 344 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-205ENST00000392004 GABRG3Q99928 467 aa9.86□□□□□ -0.83
COL6A3-205ENST00000392004 LRRC61Q9BV99 259 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms