RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ZNF197O14709 1029 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 HOXA2O43364 376 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 LEFTY1O75610 366 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 CCNKO75909 580 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 ABLIM3O94929 683 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 SEMG1P04279 462 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 ADRA2AP08913 450 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 HNF4AP41235 474 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 CDK6Q00534 326 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 VEZF1Q14119 521 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 OLIG3Q7RTU3 272 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 TRMT11Q7Z4G4 463 aaKnown RBP11.64□□□□□ -0.55
CLIP3-201ENST00000360535 MEX3DQ86XN8 651 aaKnown RBP11.64□□□□□ -0.55
CLIP3-201ENST00000360535 SCAIQ8N9R8 606 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 MINDY2Q8NBR6 621 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 KBTBD8Q8NFY9 601 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 STARD8Q92502 1023 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 PSD2Q9BQI7 771 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 TMEM175Q9BSA9 504 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 SNTG1Q9NSN8 517 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 KCNE2Q9Y6J6 123 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 TRBC2A0A5B9 178 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 ANKDD1BA6NHY2 528 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 AOC2O75106 756 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 POP4O95707 220 aaKnown RBP11.63□□□□□ -0.55
CLIP3-201ENST00000360535 GASTP01350 101 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 ZNF24P17028 368 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 IMPA1P29218 277 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 PIK3CBP42338 1070 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 MICAQ29983 383 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 GDPD4Q6W3E5 623 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 COMMD6Q7Z4G1 85 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 C11orf96Q7Z7L8 435 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 TRAPPC5Q8IUR0 188 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 GPR65Q8IYL9 337 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 COL21A1Q96P44 957 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 IL17FQ96PD4 163 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 PITX2Q99697 317 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 PCDHGB6Q9Y5F9 930 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 A0A0G2JN53 185 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 TMEM229AB2RXF0 380 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 AP3D1O14617 1153 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 APOA1P02647 267 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 ZNF8P17098 575 aaPredicted RBP11.63□□□□□ -0.55
CLIP3-201ENST00000360535 TIA1P31483 386 aaKnown RBP eCLIP11.63□□□□□ -0.55
CLIP3-201ENST00000360535 SOX6P35712 828 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 TUBA1BP68363 451 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 FADDQ13158 208 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 DUSP7Q16829 419 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 PLEKHS1Q5SXH7 462 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 ANXA8L1Q5VT79 327 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 DEF8Q6ZN54 512 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 Q6ZNB5 142 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 TUBA1AQ71U36 451 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 GDPD3Q7L5L3 318 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 RASGEF1AQ8N9B8 481 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 FOPNLQ96NB1 174 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 BCL7BQ9BQE9 202 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 LINC00597Q9H2U6 94 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 IL21Q9HBE4 155 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 MIEF1Q9NQG6 463 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 SPATA6Q9NWH7 488 aaPredicted RBP11.63□□□□□ -0.55
CLIP3-201ENST00000360535 CLEC2DQ9UHP7 191 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 PCDHGA2Q9Y5H1 932 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 BACE2Q9Y5Z0 518 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 DNAH14Q0VDD8 3507 aa11.63□□□□□ -0.55
CLIP3-201ENST00000360535 C1orf226A1L170 272 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 LEFTY2O00292 366 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 TEX28O15482 410 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 STATHP02808 62 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 INHAP05111 366 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 CDC42P60953 191 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 TBCEQ15813 527 aaPredicted RBP11.62□□□□□ -0.55
CLIP3-201ENST00000360535 ZNF284Q2VY69 593 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 MED27Q6P2C8 311 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 ARMCX6Q7L4S7 300 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 FIBINQ8TAL6 211 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 FCGR1BQ92637 280 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 HCFC1R1Q9NWW0 138 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 ZNF282Q9UDV7 671 aaPredicted RBP11.62□□□□□ -0.55
CLIP3-201ENST00000360535 POFUT2Q9Y2G5 429 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 AGAP14A8MT82 685 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 ARHGEF15O94989 841 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 CCNB2O95067 398 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 KRT8P05787 483 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 ANXA8P13928 327 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 TNNI3P19429 210 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 PCGF2P35227 344 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 ASMTP46597 345 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 DOC2BQ14184 412 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 ZMAT1Q5H9K5 638 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 METTL2BQ6P1Q9 378 aaKnown RBP11.62□□□□□ -0.55
CLIP3-201ENST00000360535 SPNS1Q9H2V7 528 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 TIGARQ9NQ88 270 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 SPG21Q9NZD8 308 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 EXO1Q9UQ84 846 aaKnown RBP11.62□□□□□ -0.55
CLIP3-201ENST00000360535 CFAP20Q9Y6A4 193 aaKnown RBP11.62□□□□□ -0.55
CLIP3-201ENST00000360535 PDZK1P1A8MUH7 402 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 C5orf58C9J3I9 102 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 RFXAPO00287 272 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms