RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SLC5A11Q8WWX8 675 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 ATL1Q8WXF7 558 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 NEIL2Q969S2 332 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 DMRTA2Q96SC8 542 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 NAP1L3Q99457 506 aaPredicted RBP19.73■□□□□ 0.75
VPS53-216ENST00000574029 VKORC1Q9BQB6 163 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 SLC6A16Q9GZN6 736 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 IGKV3D-11A0A0A0MRZ8 115 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 TCRBV16S1A1N1A0A5B0 115 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 PABPN1LA6NDY0 278 aaKnown RBP19.72■□□□□ 0.75
VPS53-216ENST00000574029 PGRMC1O00264 195 aaKnown RBP19.72■□□□□ 0.75
VPS53-216ENST00000574029 ADAM10O14672 748 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 ENO2P09104 434 aaPredicted RBP19.72■□□□□ 0.75
VPS53-216ENST00000574029 SMIM10L1P0DMW3 83 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 HLCSP50747 726 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 HYAL2Q12891 473 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 PDAP1Q13442 181 aaKnown RBP19.72■□□□□ 0.75
VPS53-216ENST00000574029 ANKRD53Q8N9V6 530 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 ACBD4Q8NC06 268 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 C14orf79Q96F83 325 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 CERS2Q96G23 380 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 SMIM10Q96HG1 83 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 SPOCK3Q9BQ16 436 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 PRDM9Q9NQV7 894 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 CACNA1CQ13936 2221 aa19.72■□□□□ 0.75
VPS53-216ENST00000574029 CTAGE15A4D2H0 777 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 PRRG2O14669 202 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 BANF1O75531 89 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 GUCA1CO95843 209 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 MAOAP21397 527 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 FNTAP49354 379 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 PGGT1BP53609 377 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 ITGA8P53708 1063 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 REEP5Q00765 189 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 MSS51Q4VC12 460 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 HECTD2Q5U5R9 776 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 CTAGE6Q86UF2 777 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 POGLUT1Q8NBL1 392 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 PDLIM5Q96HC4 596 aaKnown RBP19.71■□□□□ 0.75
VPS53-216ENST00000574029 NAT9Q9BTE0 207 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 ENKD1Q9H0I2 346 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 NECTIN3Q9NQS3 549 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 SLC17A6Q9P2U8 582 aa19.71■□□□□ 0.75
VPS53-216ENST00000574029 URADA6NGE7 173 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 RNH1P13489 461 aaKnown RBP19.7■□□□□ 0.74
VPS53-216ENST00000574029 RIPPLY3P57055 190 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 RAB8AP61006 207 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 TEDDM1Q5T9Z0 273 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 SBSNQ6UWP8 590 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 IGDCC3Q8IVU1 814 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 EID3Q8N140 333 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 TRPV3Q8NET8 790 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 TMEM125Q96AQ2 219 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 TSNARE1Q96NA8 513 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 DEFB126Q9BYW3 111 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 KLHL31Q9H511 634 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 PELI2Q9HAT8 420 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 PLAC1Q9HBJ0 212 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 ZFATQ9P243 1243 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 IKZF3Q9UKT9 509 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 CORO1CQ9ULV4 474 aaPredicted RBP19.7■□□□□ 0.74
VPS53-216ENST00000574029 VWA7Q9Y334 891 aa19.7■□□□□ 0.74
VPS53-216ENST00000574029 FCHO1O14526 889 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 DNALI1O14645 258 aaPredicted RBP19.69■□□□□ 0.74
VPS53-216ENST00000574029 PTGER1P34995 402 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 HNF4AP41235 474 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 KRTAP10-9P60411 292 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 PPP1R7Q15435 360 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 FAM45BPQ6NSW5 357 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 C3P1Q6ZMU1 363 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 CEP97Q8IW35 865 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 GPATCH11Q8N954 259 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 APCDD1LQ8NCL9 501 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 FAM45AQ8TCE6 357 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 ACTRT1Q8TDG2 376 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 AIF1LQ9BQI0 150 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 TRMT1Q9NXH9 659 aaKnown RBP19.69■□□□□ 0.74
VPS53-216ENST00000574029 KLF13Q9Y2Y9 288 aaPredicted RBP19.69■□□□□ 0.74
VPS53-216ENST00000574029 DYRK1BQ9Y463 629 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 DCHS2Q6V1P9 2916 aa19.69■□□□□ 0.74
VPS53-216ENST00000574029 C4orf51C9J302 202 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 KLRC4-KLRK1H3BQV0 150 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 PSMD12O00232 456 aaPredicted RBP19.68■□□□□ 0.74
VPS53-216ENST00000574029 SERPINA6P08185 405 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 CAPN3P20807 821 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 MEOX1P50221 254 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 PPP1R3AQ16821 1122 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 NXPE4Q6UWF7 544 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 THOC6Q86W42 341 aaKnown RBP19.68■□□□□ 0.74
VPS53-216ENST00000574029 SULF2Q8IWU5 870 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 CA13Q8N1Q1 262 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 ARMC2Q8NEN0 867 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 B3GNT7Q8NFL0 401 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 FAM57AQ8TBR7 257 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 CREB3L4Q8TEY5 395 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 TREX2Q9BQ50 279 aaPredicted RBP19.68■□□□□ 0.74
VPS53-216ENST00000574029 AICDAQ9GZX7 198 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 ITGB1BP2Q9UKP3 347 aa19.68■□□□□ 0.74
VPS53-216ENST00000574029 GOLGA6L10A0A0M3HER8 536 aa19.67■□□□□ 0.74
VPS53-216ENST00000574029 A8MUA0 341 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms