RNA–Protein interactions for RNA: ENST00000565452.1

VPS9D1-205, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 178 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-205ENST00000565452 APOA4P06727 396 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 PRSS56P0CW18 603 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 CCR7P32248 378 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 BCL6P41182 706 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 CDK16Q00536 496 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 CKAP4Q07065 602 aaKnown RBP8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 SNX1Q13596 522 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 CHRFAM7AQ494W8 412 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 PACS1Q6VY07 963 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 KIAA0408Q6ZU52 694 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 GSTA5Q7RTV2 222 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 LINC00523Q86TU6 105 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 ARMC10Q8N2F6 343 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 C17orf53Q8N3J3 647 aaPredicted RBP8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 ARHGEF39Q8N4T4 335 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 FAM71DQ8N9W8 422 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 RELL2Q8NC24 303 aaPredicted RBP8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 CDKN2AIPNLQ96HQ2 116 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 CCL19Q99731 98 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 CNPPD1Q9BV87 410 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 ACAT2Q9BWD1 397 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 EXO5Q9H790 373 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 NLE1Q9NVX2 485 aaPredicted RBP8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 ERVK-11Q9UQG0 969 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 PCDHGB3Q9Y5G1 929 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 SCN2AQ99250 2005 aa8.42□□□□□ -1.06
VPS9D1-205ENST00000565452 DNAJC13O75165 2243 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 PHF3Q92576 2039 aaKnown RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 ARHGEF33A8MVX0 844 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 SMAPO00193 183 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 SLC16A5O15375 505 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 GPC4O75487 556 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 IFNB1P01574 187 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 IL2RAP01589 272 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 STATHP02808 62 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 EZRP15311 586 aaKnown RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 RPA3P35244 121 aaPredicted RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 ADRA1AP35348 466 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 CCNFP41002 786 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 SARNPP82979 210 aaKnown RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 RHAGQ02094 409 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 MSLNQ13421 630 aaPredicted RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 DHX34Q14147 1143 aaKnown RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 ACKR1Q16570 336 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 WHAMMP3Q1A5X7 153 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 CCDC38Q502W7 563 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 ARMC3Q5W041 872 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 ZNF572Q7Z3I7 529 aaPredicted RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 VRK3Q8IV63 474 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 GPALPP1Q8IXQ4 340 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 CYP4X1Q8N118 509 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 FAM109AQ8N4B1 249 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 MNS1Q8NEH6 495 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 OR2M7Q8NG81 312 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 ATG4AQ8WYN0 398 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 ISL2Q96A47 359 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 DNAJC1Q96KC8 554 aaKnown RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 CAPZA3Q96KX2 299 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 FOPNLQ96NB1 174 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 EBNA1BP2Q99848 306 aaKnown RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 FAM118BQ9BPY3 351 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 APOL2Q9BQE5 337 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 CARD6Q9BX69 1037 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 TTTY12Q9BZ98 90 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 GSX2Q9BZM3 304 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 AMBRA1Q9C0C7 1298 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 ARNT2Q9HBZ2 717 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 ANKHQ9HCJ1 492 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 KCMF1Q9P0J7 381 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 HCN3Q9P1Z3 774 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 ADGRE2Q9UHX3 823 aa8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.41□□□□□ -1.06
VPS9D1-205ENST00000565452 A0A1W2PPR1 153 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 A0A1W2PPV9 198 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 AHRRA9YTQ3 701 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 SGK494L7N484 410 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 HCN1O60741 890 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 ITGA10O75578 1167 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 URI1O94763 535 aaPredicted RBP8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 CCNDBP1O95273 360 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 C1orf105O95561 183 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 KRT14P02533 472 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 CNR1P21554 472 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 CEACAM8P31997 349 aaPredicted RBP8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 TIMP3P35625 211 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 KCNJ1P48048 391 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 SSR4P51571 173 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 PRDX1Q06830 199 aaKnown RBP8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 SF3B4Q15427 424 aaKnown RBP eCLIP8.4□□□□□ -1.062e-6■■■■□ 21.5
VPS9D1-205ENST00000565452 GK5Q6ZS86 529 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 FBXW8Q8N3Y1 598 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 PSD4Q8NDX1 1056 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 SPATA4Q8NEY3 305 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 STYXQ8WUJ0 223 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 SKA2Q8WVK7 121 aaPredicted RBP8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 OR1F2PQ96R84 312 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 EPB41L4BQ9H329 900 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 LRRC40Q9H9A6 602 aa8.4□□□□□ -1.06
VPS9D1-205ENST00000565452 IL1RL2Q9HB29 575 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms