RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PRAMEF4O60810 478 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 MED26O95402 600 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 CLDN9O95484 217 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 CPA3P15088 417 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 IL1RNP18510 177 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 IMPDH1P20839 514 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 GNLYP22749 145 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 F8A1P23610 371 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 PTPN4P29074 926 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 PRKAA2P54646 552 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 FAM53BQ14153 422 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 CASP8Q14790 479 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 TOR1AIP1Q5JTV8 583 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 CFAP157Q5JU67 520 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 ZNF678Q5SXM1 525 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 PRAMEF9Q5VWM5 478 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 TTC19Q6DKK2 380 aaPredicted RBP16.36■□□□□ 0.21
CLN3-217ENST00000565354 TMEM214Q6NUQ4 689 aaKnown RBP16.36■□□□□ 0.21
CLN3-217ENST00000565354 ZNF517Q6ZMY9 492 aaPredicted RBP16.36■□□□□ 0.21
CLN3-217ENST00000565354 DTWD1Q8N5C7 304 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 CCNYL1Q8N7R7 359 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 ARMC2Q8NEN0 867 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 SSC4DQ8WTU2 575 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.36■□□□□ 0.21
CLN3-217ENST00000565354 MOCOSQ96EN8 888 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 SEC16BQ96JE7 1060 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 NSUN5Q96P11 429 aaKnown RBP16.36■□□□□ 0.21
CLN3-217ENST00000565354 TMEM237Q96Q45 408 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 C12orf65Q9H3J6 166 aaKnown RBP16.36■□□□□ 0.21
CLN3-217ENST00000565354 ACTL8Q9H568 366 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 POLHQ9Y253 713 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 PCDHGA6Q9Y5G7 932 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 CLEC3AO75596 197 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 WFS1O76024 890 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 OTCP00480 354 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 SERPINA6P08185 405 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 CD22P20273 847 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 SERPINB1P30740 379 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 CDH13P55290 713 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 RPS18P62269 152 aaKnown RBP16.35■□□□□ 0.21
CLN3-217ENST00000565354 OCA2Q04671 838 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 CLCQ05315 142 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 ASPHQ12797 758 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 DDX39BQ13838 428 aaKnown RBP16.35■□□□□ 0.21
CLN3-217ENST00000565354 HERC3Q15034 1050 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 RPS27LQ71UM5 84 aaKnown RBP16.35■□□□□ 0.21
CLN3-217ENST00000565354 MILR1Q7Z6M3 343 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 EFCAB3Q8N7B9 438 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 TRPC4APQ8TEL6 797 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 ZNF483Q8TF39 744 aaPredicted RBP16.35■□□□□ 0.21
CLN3-217ENST00000565354 SREK1Q8WXA9 508 aaKnown RBP16.35■□□□□ 0.21
CLN3-217ENST00000565354 FKBP10Q96AY3 582 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 FAR2Q96K12 515 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 MAGEB10Q96LZ2 347 aaPredicted RBP16.35■□□□□ 0.21
CLN3-217ENST00000565354 FAM111AQ96PZ2 611 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 C1QTNF3Q9BXJ4 246 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 COPG2Q9UBF2 871 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 ADGRE2Q9UHX3 823 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 STK38LQ9Y2H1 464 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 PLLPQ9Y342 182 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 MRPS2Q9Y399 296 aaKnown RBP16.35■□□□□ 0.21
CLN3-217ENST00000565354 PCDHGA11Q9Y5H2 935 aa16.35■□□□□ 0.21
CLN3-217ENST00000565354 G3V2L1 256 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 OR7A17O14581 309 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 CREG1O75629 220 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 NSA2O95478 260 aaKnown RBP16.34■□□□□ 0.21
CLN3-217ENST00000565354 ALBP02768 609 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 FURINP09958 794 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 ZNF888P0CJ79 500 aaPredicted RBP16.34■□□□□ 0.21
CLN3-217ENST00000565354 ALOX12P18054 663 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 TSPAN8P19075 237 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 FOLR3P41439 243 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 PCDH1Q08174 1060 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 TGM3Q08188 693 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 DSG2Q14126 1118 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 ERV3-1Q14264 604 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 CPSF6Q16630 551 aaKnown RBP eCLIP16.34■□□□□ 0.21
CLN3-217ENST00000565354 UNC50Q53HI1 259 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 NIPAL1Q6NVV3 410 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 OVCH1Q7RTY7 1134 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 SYVN1Q86TM6 617 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 OR52B6Q8NGF0 335 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 OR9A4Q8NGU2 314 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 TCP10LQ8TDR4 215 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 CREB3L4Q8TEY5 395 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 L3HYPDHQ96EM0 354 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 PGM2Q96G03 612 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 CDK15Q96Q40 435 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 NTMT1Q9BV86 223 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 SLC6A16Q9GZN6 736 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 RHBGQ9H310 441 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 ACSS2Q9NR19 701 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 TRPC4Q9UBN4 977 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 ZNF282Q9UDV7 671 aaPredicted RBP16.34■□□□□ 0.21
CLN3-217ENST00000565354 TCFL5Q9UL49 500 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 ZNF490Q9ULM2 529 aaPredicted RBP16.34■□□□□ 0.21
CLN3-217ENST00000565354 RNF11Q9Y3C5 154 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 PTRH2Q9Y3E5 179 aaKnown RBP16.34■□□□□ 0.21
CLN3-217ENST00000565354 NAALAD2Q9Y3Q0 740 aa16.34■□□□□ 0.21
CLN3-217ENST00000565354 SLC22A7Q9Y694 548 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms