RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TIMM50Q3ZCQ8 353 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 CRTC2Q53ET0 693 aaPredicted RBP10.9□□□□□ -0.66
LDLR-208ENST00000558518 ZC3H12BQ5HYM0 836 aaKnown RBP10.9□□□□□ -0.66
LDLR-208ENST00000558518 CASP12Q6UXS9 341 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 HJURPQ8NCD3 748 aaPredicted RBP10.9□□□□□ -0.66
LDLR-208ENST00000558518 RAB8BQ92930 207 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 SUSD3Q96L08 255 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 FRMD6Q96NE9 622 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 ZNF222Q9UK12 451 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 OARD1Q9Y530 152 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 BRWD3Q6RI45 1802 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 BRCA1P38398 1863 aaKnown RBP10.9□□□□□ -0.66
LDLR-208ENST00000558518 ZNF236Q9UL36 1845 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 A8MUA0 341 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 TLX2O43763 284 aaPredicted RBP10.9□□□□□ -0.66
LDLR-208ENST00000558518 PLD1Q13393 1074 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 RNF130Q86XS8 419 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 OR8H3Q8N146 312 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 OR6C4Q8NGE1 309 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 DEDD2Q8WXF8 326 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 TP53INP1Q96A56 240 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 TRMT61AQ96FX7 289 aaKnown RBP10.9□□□□□ -0.66
LDLR-208ENST00000558518 GPR62Q9BZJ7 368 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 MAGEH1Q9H213 219 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 STMN3Q9NZ72 180 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 SLC9A8Q9Y2E8 581 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 MRPS7Q9Y2R9 242 aaKnown RBP10.9□□□□□ -0.66
LDLR-208ENST00000558518 PLXNA1Q9UIW2 1896 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 ANKDD1BA6NHY2 528 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 PCP4L1A6NKN8 68 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 C5orf58C9J3I9 102 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 ERVH48-1M5A8F1 160 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 AOC2O75106 756 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 CH25HO95992 272 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 RPS3P23396 243 aaKnown RBP eCLIP10.9□□□□□ -0.671e-7■■□□□ 12
LDLR-208ENST00000558518 MAN2A2P49641 1150 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 OLR1P78380 273 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 FADDQ13158 208 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 DOC2BQ14184 412 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 FXNQ16595 210 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 GPAT3Q53EU6 434 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 OR2G6Q5TZ20 316 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 CBLL1Q75N03 491 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 ZNF683Q8IZ20 524 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 NACC2Q96BF6 587 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 SDHCQ99643 169 aaPredicted RBP10.9□□□□□ -0.67
LDLR-208ENST00000558518 CDCP1Q9H5V8 836 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 NDUFAF4Q9P032 175 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 C5AR2Q9P296 337 aa10.9□□□□□ -0.67
LDLR-208ENST00000558518 WASH4PA8MWX3 477 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 CASKO14936 926 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 PRPS2P11908 318 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 SDC2P34741 201 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 RFX2P48378 723 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 MAPKAPK2P49137 400 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 ITGA1P56199 1179 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 PCBP1Q15365 356 aaKnown RBP eCLIP10.89□□□□□ -0.67
LDLR-208ENST00000558518 IFI44LQ53G44 452 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 KRT74Q7RTS7 529 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 TMPRSS11BQ86T26 416 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 POF1BQ8WVV4 589 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 DOHHQ9BU89 302 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 BARHL1Q9BZE3 327 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 SLC22A4Q9H015 551 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 GPR52Q9Y2T5 361 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 GABRR3A8MPY1 467 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 BTN3A3O00478 584 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 NOS1APO75052 506 aaPredicted RBP10.89□□□□□ -0.67
LDLR-208ENST00000558518 KLKB1P03952 638 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 SERPIND1P05546 499 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 SRCP12931 536 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 CD72P21854 359 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 PREPP48147 710 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 PURAQ00577 322 aaKnown RBP10.89□□□□□ -0.67
LDLR-208ENST00000558518 SCARB2Q14108 478 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 FAM124AQ86V42 546 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 KRT73Q86Y46 540 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 NLGN4YQ8NFZ3 816 aaPredicted RBP10.89□□□□□ -0.67
LDLR-208ENST00000558518 GATAD2BQ8WXI9 593 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 SCAMP4Q969E2 229 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 TRIM63Q969Q1 353 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 PDLIM5Q96HC4 596 aaKnown RBP10.89□□□□□ -0.67
LDLR-208ENST00000558518 MAP6Q96JE9 813 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 P2RY13Q9BPV8 354 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 SLC35A5Q9BS91 424 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 OR51B5Q9H339 312 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 VPS29Q9UBQ0 182 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 DNMT3LQ9UJW3 386 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 PCDHB1Q9Y5F3 818 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 CFAP20Q9Y6A4 193 aaKnown RBP10.89□□□□□ -0.67
LDLR-208ENST00000558518 TRAV6A0A075B6T7 132 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 A0A0G2JN53 185 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 GASTP01350 101 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 STATHP02808 62 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 BPIP17213 487 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 PRPS1L1P21108 318 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 HNF1BP35680 557 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 KCNJ10P78508 379 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 ARF5P84085 180 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 EIF4EBP2Q13542 120 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms