RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 FMO5P49326 533 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 ACADVLP49748 655 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 VEGFCP49767 419 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 CLCNKAP51800 687 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 PITX1P78337 314 aaPredicted RBP3.6□□□□□ -1.83
CD44-235ENST00000532339 SCARB2Q14108 478 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 KCNT1Q5JUK3 1230 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 KRBOX4Q5JUW0 171 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 CYP4A22Q5TCH4 519 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 SIGIRRQ6IA17 410 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 KRT80Q6KB66 452 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 CTR9Q6PD62 1173 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 GALNTL5Q7Z4T8 443 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 NFE4Q86UQ8 179 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 ADIPOR2Q86V24 386 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 NRROSQ86YC3 692 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 GALNT13Q8IUC8 556 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 ODF3L1Q8IXM7 274 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 ZNF444Q8N0Y2 327 aaPredicted RBP3.6□□□□□ -1.83
CD44-235ENST00000532339 CIARTQ8N365 385 aaPredicted RBP3.6□□□□□ -1.83
CD44-235ENST00000532339 DEFB119Q8N690 84 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 TRIML1Q8N9V2 468 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 WDSUB1Q8N9V3 476 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 XXYLT1Q8NBI6 393 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 OR1J2Q8NGS2 313 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 LPGAT1Q92604 370 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 ZNF653Q96CK0 615 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 TCEAL4Q96EI5 215 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 GRAMD2BQ96HH9 432 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 B3GALT6Q96L58 329 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 DACH2Q96NX9 599 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 NUDCD1Q96RS6 583 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 SH3GL2Q99962 352 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 RTN4RQ9BZR6 473 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 PPIL3Q9H2H8 161 aaKnown RBP3.6□□□□□ -1.83
CD44-235ENST00000532339 UBA2Q9UBT2 640 aaPredicted RBP3.6□□□□□ -1.83
CD44-235ENST00000532339 TINAGQ9UJW2 476 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 MMP17Q9ULZ9 603 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 PRG3Q9Y2Y8 225 aaPredicted RBP3.6□□□□□ -1.83
CD44-235ENST00000532339 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.6□□□□□ -1.83
CD44-235ENST00000532339 SDK2Q58EX2 2172 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 PLIN4Q96Q06 1357 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 MYH4Q9Y623 1939 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 ARHGEF37A1IGU5 675 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 LILRA5A6NI73 299 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 PRKAB2O43741 272 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 ZG16O60844 167 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 CREG1O75629 220 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 RSL1D1O76021 490 aaKnown RBP3.59□□□□□ -1.83
CD44-235ENST00000532339 HLA-DOBP13765 273 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 TIMP3P35625 211 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 CCR2P41597 374 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 OR1G1P47890 313 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 KRT83P78385 493 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 SP4Q02446 784 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 MYLK3Q32MK0 819 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 NSUN5P2Q63ZY6 315 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 FRG2Q64ET8 278 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 LCN10Q6JVE6 187 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 TRNP1Q6NT89 227 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 FUT10Q6P4F1 479 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 GFRALQ6UXV0 394 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 KDM7AQ6ZMT4 941 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 RBPMS2Q6ZRY4 209 aaKnown RBP3.59□□□□□ -1.83
CD44-235ENST00000532339 DSG4Q86SJ6 1040 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 CEP57Q86XR8 500 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 KMT5CQ86Y97 462 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 CHERPQ8IWX8 916 aaKnown RBP3.59□□□□□ -1.83
CD44-235ENST00000532339 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.59□□□□□ -1.83
CD44-235ENST00000532339 BEST3Q8N1M1 668 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 TC2NQ8N9U0 490 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 LEMD2Q8NC56 503 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 MCUQ8NE86 351 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 HM13Q8TCT9 377 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 UBE2Q2Q8WVN8 375 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 SEPT1Q8WYJ6 367 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 RND1Q92730 232 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 PTERQ96BW5 349 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 HDAC11Q96DB2 347 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 LINC00615Q96LM1 132 aaPredicted RBP3.59□□□□□ -1.83
CD44-235ENST00000532339 MTMR9Q96QG7 549 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 CDRT15Q96T59 188 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 ADPGKQ9BRR6 497 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 SCRT2Q9NQ03 307 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 TAAR2Q9P1P5 351 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 TTC7AQ9ULT0 858 aaPredicted RBP3.59□□□□□ -1.83
CD44-235ENST00000532339 AMDHD2Q9Y303 409 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 NFASCO94856 1347 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 ZBED9Q6R2W3 1325 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 NSD1Q96L73 2696 aaPredicted RBP3.59□□□□□ -1.83
CD44-235ENST00000532339 COL1A2P08123 1366 aa3.59□□□□□ -1.83
CD44-235ENST00000532339 MYO5AQ9Y4I1 1855 aaKnown RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 PLXND1Q9Y4D7 1925 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 ANK2Q01484 3957 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 KIF26BQ2KJY2 2108 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 GSTTP1A0A1W2PQM5 241 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 SPRY1O43609 319 aaPredicted RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 PLPP2O43688 288 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 STAM2O75886 525 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms