RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ODF2LQ9ULJ1 636 aa5.14□□□□□ -1.59
USP40-213ENST00000483216 A0A1W2PPK0 400 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 NDUFAB1O14561 156 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 ACHEP22303 614 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 PPP1R2P41236 205 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 LEPRP48357 1165 aaKnown RBP5.13□□□□□ -1.59
USP40-213ENST00000483216 VAMP7P51809 220 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 ACSM1Q08AH1 577 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 STK38Q15208 465 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 NPTX1Q15818 432 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 MTHFSDQ2M296 383 aaKnown RBP5.13□□□□□ -1.59
USP40-213ENST00000483216 CCDC57Q2TAC2 916 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 KRT39Q6A163 491 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 RPUSD3Q6P087 351 aaKnown RBP5.13□□□□□ -1.59
USP40-213ENST00000483216 TRIM65Q6PJ69 517 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 TMED8Q6PL24 325 aaPredicted RBP5.13□□□□□ -1.59
USP40-213ENST00000483216 CCDC121Q6ZUS5 278 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 VSTM4Q8IW00 320 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 SLC4A11Q8NBS3 891 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 LZICQ8WZA0 190 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 ZNF274Q96GC6 653 aaPredicted RBP5.13□□□□□ -1.59
USP40-213ENST00000483216 CENPOQ9BU64 300 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 XPO4Q9C0E2 1151 aaKnown RBP5.13□□□□□ -1.59
USP40-213ENST00000483216 ZMYND12Q9H0C1 365 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 HAUS4Q9H6D7 363 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 SUDS3Q9H7L9 328 aaPredicted RBP5.13□□□□□ -1.59
USP40-213ENST00000483216 MAN2C1Q9NTJ4 1040 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 IFNKQ9P0W0 207 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 NRBP1Q9UHY1 535 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 USP16Q9Y5T5 823 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 LTN1O94822 1766 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 JCADQ9P266 1359 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 CACNA1FO60840 1977 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 NFAT5O94916 1531 aa5.13□□□□□ -1.59
USP40-213ENST00000483216 PHRF1Q9P1Y6 1649 aaKnown RBP5.12□□□□□ -1.59
USP40-213ENST00000483216 IGLV7-46A0A075B6I9 117 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 CFAP73A6NFT4 308 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 CASTOR2A6NHX0 329 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 CYSRT1A8MQ03 144 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 EIF3HO15372 352 aaKnown RBP eCLIP5.12□□□□□ -1.59
USP40-213ENST00000483216 DCXO43602 365 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 EXTL3O43909 919 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 SURF6O75683 361 aaKnown RBP5.12□□□□□ -1.59
USP40-213ENST00000483216 SLCO2B1O94956 709 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 SEC24AO95486 1093 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 DNTTP04053 509 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 OR52Z1P0C646 297 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 DPEP1P16444 411 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 EEF1DP29692 281 aaKnown RBP5.12□□□□□ -1.59
USP40-213ENST00000483216 PPP5CP53041 499 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 CLDN15P56746 228 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 DYNC1I2Q13409 638 aaKnown RBP5.12□□□□□ -1.59
USP40-213ENST00000483216 TMED1Q13445 227 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 TRIM29Q14134 588 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 NECTIN1Q15223 517 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 HLA-BQ31612 363 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 TCP11X2Q5H9J9 407 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 WLSQ5T9L3 541 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 BTN2A1Q7KYR7 527 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 PTAR1Q7Z6K3 402 aaPredicted RBP5.12□□□□□ -1.59
USP40-213ENST00000483216 IQCA1Q86XH1 822 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 PI4KAP1Q8N8J0 262 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 OR10Q1Q8NGQ4 319 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 ITFG2Q969R8 447 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 OTUB1Q96FW1 271 aaPredicted RBP5.12□□□□□ -1.59
USP40-213ENST00000483216 WBP1Q96G27 269 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 SYT11Q9BT88 431 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 NUP58Q9BVL2 599 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 PRRG4Q9BZD6 226 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 STMN4Q9H169 189 aaPredicted RBP5.12□□□□□ -1.59
USP40-213ENST00000483216 C19orf25Q9UFG5 118 aaPredicted RBP5.12□□□□□ -1.59
USP40-213ENST00000483216 ASIC3Q9UHC3 531 aa5.12□□□□□ -1.59
USP40-213ENST00000483216 KDM6AO15550 1401 aaPredicted RBP5.12□□□□□ -1.59
USP40-213ENST00000483216 FAM208AQ9UK61 1670 aaKnown RBP5.12□□□□□ -1.59
USP40-213ENST00000483216 A8MXE2 369 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 E7ENQ6 273 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 H7C423 109 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 AP5Z1O43299 807 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 PLOD3O60568 738 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 PFKFB2O60825 505 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 TBX10O75333 385 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 FLOT1O75955 427 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 NEBLO76041 1014 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 ACSL3O95573 720 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 KIF5BP33176 963 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 CYLC1P35663 651 aaPredicted RBP5.11□□□□□ -1.59
USP40-213ENST00000483216 KRT20P35900 424 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 PAX9P55771 341 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 CCDC40Q4G0X9 1142 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 TCTE1Q5JU00 501 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 ZNF772Q68DY9 489 aaPredicted RBP5.11□□□□□ -1.59
USP40-213ENST00000483216 OR4A47Q6IF82 309 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 ZNF613Q6PF04 617 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 CWC27Q6UX04 472 aaKnown RBP5.11□□□□□ -1.59
USP40-213ENST00000483216 LRRC31Q6UY01 552 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 MFN1Q8IWA4 741 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 OR8H2Q8N162 312 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 RYBPQ8N488 228 aaPredicted RBP5.11□□□□□ -1.59
USP40-213ENST00000483216 CCDC89Q8N998 374 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 GPRC5AQ8NFJ5 357 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms