RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	LEF1	Q9UJU2	399 aa	Predicted RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	EXO1	Q9UQ84	846 aa	Known RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	BTBD3	Q9Y2F9	522 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PCDH15	Q96QU1	1955 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	ARHGAP10	A1A4S6	786 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	DYTN	A2CJ06	578 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	GABRR3	A8MPY1	467 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PCDHGA12	O60330	932 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PGR	P06401	933 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	SLC35G6	P0C7Q6	338 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	S100A3	P33764	101 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	SSR2	P43308	183 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	NUBP1	P53384	320 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	VSX2	P58304	361 aa	Predicted RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	STXBP1	P61764	594 aa	Known RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	SNRPN	P63162	240 aa	Known RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	RGS1	Q08116	209 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	UGT8	Q16880	541 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	DEFB110	Q30KQ9	67 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PLA2G2C	Q5R387	149 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	PERM1	Q5SV97	790 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	ZNF793	Q6ZN11	406 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	NUDT13	Q86X67	352 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	TMEM132C	Q8N3T6	1108 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	CAMKV	Q8NCB2	501 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	RERG	Q96A58	199 aa	Predicted RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	TESC	Q96BS2	214 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	TM4SF18	Q96CE8	201 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	TCTN2	Q96GX1	697 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	QRFPR	Q96P65	431 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	RAB3IP	Q96QF0	476 aa	Predicted RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	OR52E6	Q96RD3	313 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	DDX31	Q9H8H2	851 aa	Known RBP	10.68	□□□□□ -0.7
APTX-223	ENST00000479656	STARD5	Q9NSY2	213 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	TMEM9	Q9P0T7	183 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	CROT	Q9UKG9	612 aa		10.68	□□□□□ -0.7
APTX-223	ENST00000479656	MDC1	Q14676	2089 aa	Known RBP	10.67	□□□□□ -0.7
APTX-223	ENST00000479656	TTC28	Q96AY4	2481 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656		A0A088AWK7	358 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	EME2	A4GXA9	379 aa	Predicted RBP	10.67	□□□□□ -0.7
APTX-223	ENST00000479656	TLCD2	A6NGC4	264 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	DUX1	O43812	170 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	TMPRSS11D	O60235	418 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	PRMT3	O60678	531 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	RASSF9	O75901	435 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	C9	P02748	559 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	CTSB	P07858	339 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	IL3	P08700	152 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	ZNF888	P0CJ79	500 aa	Predicted RBP	10.67	□□□□□ -0.7
APTX-223	ENST00000479656	PIM1	P11309	404 aa	Predicted RBP	10.67	□□□□□ -0.7
APTX-223	ENST00000479656	COX7A2	P14406	83 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	PNLIP	P16233	465 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	MAPK12	P53778	367 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	PSME3	P61289	254 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	BTN3A2	P78410	334 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	GPLD1	P80108	840 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	NFYC	Q13952	458 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	CAPRIN1	Q14444	709 aa	Known RBP	10.67	□□□□□ -0.7
APTX-223	ENST00000479656	MAPKAPK3	Q16644	382 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	COQ5	Q5HYK3	327 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	SNAP47	Q5SQN1	464 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	OR4F3	Q6IEY1	312 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	FAM71E1	Q6IPT2	247 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	TRIM40	Q6P9F5	258 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	SPRED1	Q7Z699	444 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	PLXDC1	Q8IUK5	500 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	MCAT	Q8IVS2	390 aa	Known RBP	10.67	□□□□□ -0.7
APTX-223	ENST00000479656	PGAM4	Q8N0Y7	254 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	DNAJC22	Q8N4W6	341 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	SRFBP1	Q8NEF9	429 aa	Known RBP	10.67	□□□□□ -0.7
APTX-223	ENST00000479656	OR6C4	Q8NGE1	309 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	OR8K5	Q8NH50	307 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	UTP15	Q8TED0	518 aa	Known RBP	10.67	□□□□□ -0.7
APTX-223	ENST00000479656	ROPN1L	Q96C74	230 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	KCNC2	Q96PR1	638 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	CDRT15	Q96T59	188 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	SLC39A3	Q9BRY0	314 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	TBCD	Q9BTW9	1192 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	EPB41L1	Q9H4G0	881 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	MYNN	Q9NPC7	610 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	SH3BP4	Q9P0V3	963 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	ADAM29	Q9UKF5	820 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	PACSIN3	Q9UKS6	424 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	PCDHGA7	Q9Y5G6	932 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	CABIN1	Q9Y6J0	2220 aa		10.67	□□□□□ -0.7
APTX-223	ENST00000479656	ARID1B	Q8NFD5	2236 aa	Predicted RBP	10.67	□□□□□ -0.7
APTX-223	ENST00000479656	VPS13A	Q96RL7	3174 aa		10.66	□□□□□ -0.7
APTX-223	ENST00000479656		A0A0A6YYD5	115 aa		10.66	□□□□□ -0.7
APTX-223	ENST00000479656		A8MU76	341 aa		10.66	□□□□□ -0.7
APTX-223	ENST00000479656		H0YHG0	523 aa		10.66	□□□□□ -0.7
APTX-223	ENST00000479656	SCAMP2	O15127	329 aa	Known RBP	10.66	□□□□□ -0.7
APTX-223	ENST00000479656	LAMP1	P11279	417 aa		10.66	□□□□□ -0.7
APTX-223	ENST00000479656	ATP5A1	P25705	553 aa	Known RBP	10.66	□□□□□ -0.7
APTX-223	ENST00000479656	CSF2RB	P32927	897 aa		10.66	□□□□□ -0.7
APTX-223	ENST00000479656	C21orf58	P58505	322 aa		10.66	□□□□□ -0.7
APTX-223	ENST00000479656	SRSF11	Q05519	484 aa	Known RBP	10.66	□□□□□ -0.7
APTX-223	ENST00000479656	SLAMF1	Q13291	335 aa		10.66	□□□□□ -0.7
APTX-223	ENST00000479656	ZC3H12B	Q5HYM0	836 aa	Known RBP	10.66	□□□□□ -0.7
APTX-223	ENST00000479656	HACD2	Q6Y1H2	254 aa		10.66	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms