RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 TOMM5Q8N4H5 51 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 GNPDA2Q8TDQ7 276 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 ZNF516Q92618 1163 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 LENG8Q96PV6 779 aaPredicted RBP8.43□□□□□ -1.06
HPS4-209ENST00000466781 OR8D2Q9GZM6 311 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 CA14Q9ULX7 337 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 FARSAQ9Y285 508 aaKnown RBP8.43□□□□□ -1.06
HPS4-209ENST00000466781 TCRBV7S2A1N4TA0A589 114 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 TRBC2A0A5B9 178 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 SH3PXD2BA1X283 911 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 CLIC1O00299 241 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 ARPC2O15144 300 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 GRID2O43424 1007 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 SLC2A2P11168 524 aaPredicted RBP8.43□□□□□ -1.06
HPS4-209ENST00000466781 CFL1P23528 166 aaKnown RBP8.43□□□□□ -1.06
HPS4-209ENST00000466781 STOMP27105 288 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 PREPP48147 710 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 KLF1Q13351 362 aaPredicted RBP8.43□□□□□ -1.06
HPS4-209ENST00000466781 PMS2P3Q13401 168 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 DNASE1L3Q13609 305 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 OR4F3Q6IEY1 312 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 CEACAM20Q6UY09 585 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 NTAN1Q96AB6 310 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 C16orf70Q9BSU1 422 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 LRRC3Q9BY71 257 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 HHATLQ9HCP6 504 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 SSU72Q9NP77 194 aaKnown RBP8.43□□□□□ -1.06
HPS4-209ENST00000466781 PCDHGA2Q9Y5H1 932 aa8.43□□□□□ -1.06
HPS4-209ENST00000466781 LOC100509620A0A075B734 347 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 HNRNPA1P09651 372 aaKnown RBP eCLIP8.42□□□□□ -1.06
HPS4-209ENST00000466781 ANXA3P12429 323 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 OXTRP30559 389 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 VSX2P58304 361 aaPredicted RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 RPS21P63220 83 aaKnown RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 POU6F2P78424 691 aaPredicted RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 BNIP3Q12983 259 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 TUBB3Q13509 450 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 TMEM35AQ53FP2 167 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 TPRG1LQ5T0D9 272 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 PAQR3Q6TCH7 311 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 BOLLQ8N9W6 283 aaKnown RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 OR9A1PQ8NGU1 263 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 MOAP1Q96BY2 351 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 SH3YL1Q96HL8 342 aaPredicted RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 NECAB3Q96P71 396 aaPredicted RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 AJAP1Q9UKB5 411 aaPredicted RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 STRCP1A6NGW2 1772 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 ACOT7O00154 380 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 MAN2B1O00754 1011 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 MAP2K7O14733 419 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 GNRHRP30968 328 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 RAB28P51157 221 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 CAV3P56539 151 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 RAB8AP61006 207 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 RPS13P62277 151 aaKnown RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 DSC3Q14574 896 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 ABRAXAS2Q15018 415 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 SEC23BQ15437 767 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 DPYSL2Q16555 572 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 CARD17Q5XLA6 110 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 GOLGA7Q7Z5G4 137 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 TMEM41AQ96HV5 264 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 NECTIN4Q96NY8 510 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 G6PC3Q9BUM1 346 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 DTLQ9NZJ0 730 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 C13orf42A0A1B0GVH6 325 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 M0R036 132 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 SHOX2O60902 331 aaPredicted RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 GPR32O75388 356 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 RAD51DO75771 328 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 F7P08709 466 aaPredicted RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 HLA-EP13747 358 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 MAN2A2P49641 1150 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 CCNHP51946 323 aaPredicted RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 MALLQ13021 153 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 ADGRE1Q14246 886 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 ZNF267Q14586 743 aaPredicted RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 OGFOD2Q6N063 350 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 SMARCD2Q92925 531 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 TUBGCP5Q96RT8 1024 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 PKP4Q99569 1192 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 NTPCRQ9BSD7 190 aaKnown RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 POLDIP3Q9BY77 421 aaKnown RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 SLC22A4Q9H015 551 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 FNIP2Q9P278 1114 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 SUSD2Q9UGT4 822 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 GALTP07902 379 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 CHRNB2P17787 502 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 LHCGRP22888 699 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 HNRNPH3P31942 346 aaKnown RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 RPS15P62841 145 aaKnown RBP8.42□□□□□ -1.06
HPS4-209ENST00000466781 ADAM15Q13444 863 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 HGSNATQ68CP4 663 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 FBXL22Q6P050 247 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 TPRG1Q6ZUI0 275 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 ZNF550Q7Z398 422 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 KLHL15Q96M94 604 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 KCND1Q9NSA2 647 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 HRASLS2Q9NWW9 162 aa8.42□□□□□ -1.06
HPS4-209ENST00000466781 NLGN3Q9NZ94 848 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms