RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 WASHC1A8K0Z3 465 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 B8ZZF3 427 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 GTPBP1O00178 669 aaKnown RBP11.25□□□□□ -0.61
CPSF3-202ENST00000460593 PLOD3O60568 738 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 STK16O75716 305 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 CLDN9O95484 217 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 EPOP01588 193 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 MSL3P1P0C860 447 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 ETFAP13804 333 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 SDC2P34741 201 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 HTR7P34969 479 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 PTGS2P35354 604 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 CRATP43155 626 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 TOR1AIP1Q5JTV8 583 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 PLAG1Q6DJT9 500 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 C19orf48Q6RUI8 117 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 CD300LGQ6UXG3 332 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 STK40Q8N2I9 435 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 AQP11Q8NBQ7 271 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 PEX13Q92968 403 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 CRELD1Q96HD1 420 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 P2RY12Q9H244 342 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 PPIL3Q9H2H8 161 aaKnown RBP11.25□□□□□ -0.61
CPSF3-202ENST00000460593 B3GAT2Q9NPZ5 323 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 ST3GAL5Q9UNP4 418 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 PCDHB9Q9Y5E1 797 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 PLXNB2O15031 1838 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 ANKRD66B4E2M5 251 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 GASTP01350 101 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 TIMM50Q3ZCQ8 353 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 NOXRED1Q6NXP6 359 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 B3GLCTQ6Y288 498 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 C16orf59Q7L2K0 433 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 ATAD1Q8NBU5 361 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 OR6C4Q8NGE1 309 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 PIH1D2Q8WWB5 315 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 ATG10Q9H0Y0 220 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 CCSER2Q9H7U1 834 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 GLTPQ9NZD2 209 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 PIKFYVEQ9Y2I7 2098 aa11.25□□□□□ -0.61
CPSF3-202ENST00000460593 SCN2BO60939 215 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 PSIP1O75475 530 aaKnown RBP11.24□□□□□ -0.61
CPSF3-202ENST00000460593 GBAP04062 536 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 SYPP08247 313 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 GPX2P18283 190 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 CHMP24386 653 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 PSMA1P25786 263 aaKnown RBP11.24□□□□□ -0.61
CPSF3-202ENST00000460593 PTGER3P43115 390 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 SOX9P48436 509 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 ARHGEF6Q15052 776 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 SPHARQ15513 63 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 WSCD2Q2TBF2 565 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 DUSP28Q4G0W2 176 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 SLC43A3Q8NBI5 491 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 BHMTQ93088 406 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 PHF21AQ96BD5 680 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 MTERF3Q96E29 417 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 C8orf48Q96LL4 319 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 C1QTNF6Q9BXI9 259 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.24□□□□□ -0.61
CPSF3-202ENST00000460593 ARL15Q9NXU5 204 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 MARCH2Q9P0N8 246 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 PIM2Q9P1W9 311 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 PLEKHB1Q9UF11 243 aaPredicted RBP11.24□□□□□ -0.61
CPSF3-202ENST00000460593 OARD1Q9Y530 152 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 SNX11Q9Y5W9 270 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 A0A1B0GVC2 190 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 A6NIN4 97 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 BTN3A3O00478 584 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 TSPAN4O14817 238 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 EBLN1P0CF75 366 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 TRAPPC2P0DI81 140 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 TRAPPC2BP0DI82 140 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 SLC6A4P31645 630 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 GKP32189 559 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 SGSHP51688 502 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 SNTA1Q13424 505 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 INSL4Q14641 139 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 CCSAPQ6IQ19 270 aaPredicted RBP11.24□□□□□ -0.61
CPSF3-202ENST00000460593 PDZD3Q86UT5 571 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 SYNPOQ8N3V7 929 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 IQCF1Q8N6M8 205 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 OR5AK3PQ8NH89 298 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 TM9SF2Q99805 663 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 MGME1Q9BQP7 344 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 DOHHQ9BU89 302 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 GPR63Q9BZJ6 419 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 H3BUI4 141 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 KPNA5O15131 536 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 OR7A10O76100 309 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 PRAMEF1O95521 474 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 SCG5P05408 212 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 MAP2K3P46734 347 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 MICAQ29983 383 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 MLIPQ5VWP3 458 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 IDO2Q6ZQW0 420 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 KRT73Q86Y46 540 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 TCTE3Q8IZS6 198 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 DENND6BQ8NEG7 585 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 OR4K1Q8NGD4 311 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms