RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ICKQ9UPZ9 632 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 LRRC37A3O60309 1634 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 ARPC5O15511 151 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 OR1I1O60431 355 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 BMP1P13497 986 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 ZNF132P52740 706 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 GPM6BQ13491 265 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 NAE1Q13564 534 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 FSTL4Q6MZW2 842 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 SLC30A6Q6NXT4 461 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 LGI4Q8N135 537 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 PYROXD2Q8N2H3 581 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 FAM98AQ8NCA5 519 aaKnown RBP12.87□□□□□ -0.35
USP40-208ENST00000450966 ZBTB44Q8NCP5 570 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 TRIM36Q9NQ86 728 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 GPSM3Q9Y4H4 160 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 PCDHGB5Q9Y5G0 923 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 TCAF2A6NFQ2 919 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 FANCGO15287 622 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 DNAJB1P25685 340 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 PFKPQ01813 784 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 TATDN3Q17R31 274 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 C10orf62Q5T681 223 aaPredicted RBP12.87□□□□□ -0.35
USP40-208ENST00000450966 FUT10Q6P4F1 479 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 FAM46DQ8NEK8 389 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 TSPEARQ8WU66 669 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 PYURFQ96I23 114 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 NECAB3Q96P71 396 aaPredicted RBP12.87□□□□□ -0.35
USP40-208ENST00000450966 OR2M2Q96R28 347 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 POLR2J3Q9H1A7 115 aaKnown RBP12.87□□□□□ -0.35
USP40-208ENST00000450966 C19orf12Q9NSK7 152 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.87□□□□□ -0.35
USP40-208ENST00000450966 C13orf42A0A1B0GVH6 325 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 RAB36O95755 333 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 LALBAP00709 142 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 AQP1P29972 269 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 XKP51811 444 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 RNF4P78317 190 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 HACD2Q6Y1H2 254 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 SLC30A8Q8IWU4 369 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 PLD5Q8N7P1 536 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 OR2L3Q8NG85 312 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 ACOT11Q8WXI4 607 aaPredicted RBP12.87□□□□□ -0.35
USP40-208ENST00000450966 LYARQ9NX58 379 aaKnown RBP12.87□□□□□ -0.35
USP40-208ENST00000450966 CFAP97Q9P2B7 532 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 AHSA1O95433 338 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 PRNPP04156 253 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 ALDOBP05062 364 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 ASMTP46597 345 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 PPP3CAQ08209 521 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 HSPA14Q0VDF9 509 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 LRRC32Q14392 662 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 TIFABQ6ZNK6 161 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 RERGQ96A58 199 aaPredicted RBP12.86□□□□□ -0.35
USP40-208ENST00000450966 ST6GALNAC4Q9H4F1 302 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 ZNF223Q9UK11 482 aaPredicted RBP12.86□□□□□ -0.35
USP40-208ENST00000450966 ASTN1O14525 1302 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 CICQ96RK0 1608 aaPredicted RBP12.86□□□□□ -0.35
USP40-208ENST00000450966 RFXAPO00287 272 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 POU2F1P14859 743 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 KCNC1P48547 511 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 CEACAM7Q14002 265 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 HACD4Q5VWC8 232 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 RPL13AP3Q6NVV1 102 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 FSTL5Q8N475 847 aaPredicted RBP12.86□□□□□ -0.35
USP40-208ENST00000450966 SAMD12Q8N8I0 201 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 ZNF454Q8N9F8 522 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 ZNF565Q8N9K5 539 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 TSEN15Q8WW01 171 aaKnown RBP12.86□□□□□ -0.35
USP40-208ENST00000450966 TMED9Q9BVK6 235 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 ASH2LQ9UBL3 628 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 CDH10Q9Y6N8 788 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 A0A1W2PRQ8 180 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 WASHC1A8K0Z3 465 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 TLR5O60602 858 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 TP53P04637 393 aaPredicted RBP12.86□□□□□ -0.35
USP40-208ENST00000450966 PRPS2P11908 318 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 GM2AP17900 193 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 CD86P42081 329 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 CDKN2BP42772 138 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 IDH3GP51553 393 aaPredicted RBP12.86□□□□□ -0.35
USP40-208ENST00000450966 TAS2R43P59537 309 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 CDNFQ49AH0 187 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 INTS6LQ5JSJ4 861 aaKnown RBP12.86□□□□□ -0.35
USP40-208ENST00000450966 CERCAMQ5T4B2 595 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 STRADAQ7RTN6 431 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 OTOP2Q7RTS6 562 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 TMED4Q7Z7H5 227 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 PLD4Q96BZ4 506 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 CLCC1Q96S66 551 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 COMMD4Q9H0A8 199 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 SDCBP2Q9H190 292 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 LIN7BQ9HAP6 207 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 SMCO4Q9NRQ5 59 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 HTR3BO95264 441 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 TSPAN15O95858 294 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 SLC10A3P09131 477 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 TRAM1Q15629 374 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 LRIF1Q5T3J3 769 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 FBXO46Q6PJ61 603 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms