RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 RGS4P49798 205 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 ZXDBP98169 803 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 PYDC2Q56P42 97 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 ZBTB37Q5TC79 503 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 LCN1P1Q5VSP4 162 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 SDHAF4Q5VUM1 108 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 PTRHD1Q6GMV3 140 aaKnown RBP10.29□□□□□ -0.76
USP54-204ENST00000422491 SLC44A2Q8IWA5 706 aaPredicted RBP10.29□□□□□ -0.76
USP54-204ENST00000422491 CLDN22Q8N7P3 220 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 HASPINQ8TF76 798 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 UPRTQ96BW1 309 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 CCDC120Q96HB5 630 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 CINPQ9BW66 212 aaPredicted RBP10.29□□□□□ -0.76
USP54-204ENST00000422491 ARHGAP39Q9C0H5 1083 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 PDGFDQ9GZP0 370 aaPredicted RBP10.29□□□□□ -0.76
USP54-204ENST00000422491 RBFOX1Q9NWB1 397 aaKnown RBP10.29□□□□□ -0.76
USP54-204ENST00000422491 MCUBQ9NWR8 336 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 CLN6Q9NWW5 311 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 HCN4Q9Y3Q4 1203 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 PCDHGC4Q9Y5F7 938 aa10.29□□□□□ -0.76
USP54-204ENST00000422491 PLD2O14939 933 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 PDPK1O15530 556 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 C1SP09871 688 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 SRCP12931 536 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 POU2F1P14859 743 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 PCGF2P35227 344 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 MAPK12P53778 367 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 RRAS2P62070 204 aaPredicted RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 POU6F2P78424 691 aaPredicted RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 SRSF11Q05519 484 aaKnown RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 CACNG1Q06432 222 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 HNRNPA0Q13151 305 aaKnown RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 BOP1Q14137 746 aaKnown RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 TJAP1Q5JTD0 557 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 NOXRED1Q6NXP6 359 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 PTCHD4Q6ZW05 846 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 TRIM69Q86WT6 500 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 SCN4BQ8IWT1 228 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 C9orf62Q8N4C0 152 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 KLHDC9Q8NEP7 349 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 OR7D4Q8NG98 312 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 OR8J2Q8NGG1 315 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 B3GALT6Q96L58 329 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 FCRL1Q96LA6 429 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 FAM193BQ96PV7 902 aaPredicted RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 BOCQ9BWV1 1114 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 C1QTNF7Q9BXJ2 289 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 RACGAP1Q9H0H5 632 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 FAM120CQ9NX05 1096 aaKnown RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 PLXNA3P51805 1871 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 TRAV19A0A0A6YYK7 116 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 C1orf226A1L170 272 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 M0QZQ0 153 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 PITPNM1O00562 1244 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 CXCL11O14625 94 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 PDGFAP04085 211 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 GSTM1P09488 218 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 CLEC2LP0C7M8 214 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 PCSK2P16519 638 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 DGKAP23743 735 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 CNR2P34972 360 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 OR1E2P47887 323 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 LIMS1P48059 325 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 CLDN20P56880 219 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 MAB21L1Q13394 359 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 GGTA1PQ4G0N0 100 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 PXDC1Q5TGL8 231 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 HSDL2Q6YN16 418 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 MIB1Q86YT6 1006 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 PHC2Q8IXK0 858 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 ATP6V1C2Q8NEY4 427 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 LRRC20Q8TCA0 184 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 GTPBP3Q969Y2 492 aaKnown RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 EID2BQ96D98 161 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 ZBED6CLQ96FA7 236 aaPredicted RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 DCLRE1CQ96SD1 692 aaKnown RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 FAM129BQ96TA1 746 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 MAPKAP1Q9BPZ7 522 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 EBPLQ9BY08 206 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 ELOVL6Q9H5J4 265 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 RDH14Q9HBH5 336 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 TXNL4BQ9NX01 149 aaKnown RBP10.28□□□□□ -0.76
USP54-204ENST00000422491 SSR3Q9UNL2 185 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 RAI2Q9Y5P3 530 aa10.28□□□□□ -0.76
USP54-204ENST00000422491 WASHC1A8K0Z3 465 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 TRIM77I1YAP6 450 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 PCDH17O14917 1159 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 MYL12BO14950 172 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 HCN1O60741 890 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 ENTPD6O75354 484 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 F11P03951 625 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 OPN1SWP03999 348 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 OR4Q2P0C623 313 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 MYL12AP19105 171 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 RPS3P23396 243 aaKnown RBP eCLIP10.27□□□□□ -0.76
USP54-204ENST00000422491 EVI2BP34910 448 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 MAN2A2P49641 1150 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 ARHGEF7Q14155 803 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 RGNQ15493 299 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 ZNF628Q5EBL2 1059 aa10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms