RNA–Protein interactions for RNA: ENST00000409416.5

COL6A2-204, Transcript of collagen type VI alpha 2 chain, humanhuman

TSL 5 BASIC

Gene COL6A2, Length 3,430 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-204ENST00000409416 DEFB119Q8N690 84 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 RASGEF1AQ8N9B8 481 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 WDR48Q8TAF3 677 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 CHPT1Q8WUD6 406 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 CLP1Q92989 425 aaKnown RBP12.88□□□□□ -0.35
COL6A2-204ENST00000409416 TMEM203Q969S6 136 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 NXPE3Q969Y0 559 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 PPP1R14BQ96C90 147 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 FERD3LQ96RJ6 166 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 KXD1Q9BQD3 176 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 ABCG4Q9H172 646 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 ATAD3AQ9NVI7 634 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 DUSP12Q9UNI6 340 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 PRELID1Q9Y255 219 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 PCDHGA10Q9Y5H3 936 aa12.88□□□□□ -0.35
COL6A2-204ENST00000409416 EFCAB9A8MZ26 197 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 GAPDHSO14556 408 aaPredicted RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 FRS3O43559 492 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 OR1F1O43749 312 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 ATG13O75143 517 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 CST5P28325 142 aaPredicted RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 C21orf33P30042 268 aaPredicted RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 RPP38P78345 283 aaKnown RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 RAB33AQ14088 237 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 CTF1Q16619 201 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 RFX4Q33E94 735 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TPGS2Q68CL5 300 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TMEM215Q68D42 235 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 CNKSR3Q6P9H4 555 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 RNF130Q86XS8 419 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 CELF5Q8N6W0 485 aaKnown RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 OR14C36Q8NHC7 312 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 ZCCHC10Q8TBK6 192 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 ALPK1Q96QP1 1244 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 ZBTB20Q9HC78 741 aaPredicted RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBC1D3DA0A087WVF3 549 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBC1D3IA0A087WXS9 549 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBC1D3EA0A087X179 549 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBC1D3KA0A087X1G2 549 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBC1D3FA6NER0 549 aaPredicted RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBC1D3LB9A6J9 549 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 H7C0S8 307 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 HYAL3O43820 417 aaPredicted RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 CCNDBP1O95273 360 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 RETP07949 1114 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBC1D3HP0C7X1 549 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 ALOX12P18054 663 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 SERPINB1P30740 379 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 KRT20P35900 424 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 ATP6V1E1P36543 226 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 HOXC5Q00444 222 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBC1D3GQ6DHY5 549 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 LAIR1Q6GTX8 287 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBC1D3CQ6IPX1 549 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBC1D3Q8IZP1 549 aaPredicted RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 OR9Q2Q8NGE9 314 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TRIM43Q96BQ3 446 aaPredicted RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 PPCDCQ96CD2 204 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 PDLIM5Q96HC4 596 aaKnown RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 RDH12Q96NR8 316 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 CHCHD6Q9BRQ6 235 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 WDR12Q9GZL7 423 aaKnown RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TOR4AQ9NXH8 423 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 RABL2AQ9UBK7 228 aaPredicted RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 PATJQ8NI35 1801 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 BMP4P12644 408 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 KDELR2P33947 212 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 MAPK9P45984 424 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 MANFP55145 182 aaKnown RBP12.87□□□□□ -0.35
COL6A2-204ENST00000409416 TBPL1P62380 186 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 VMACQ2NL98 169 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 POC5Q8NA72 575 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 SLC35B4Q969S0 331 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 COPS4Q9BT78 406 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 KCNK12Q9HB15 430 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 SERHLQ9NQF3 203 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 ERVW-1Q9UQF0 538 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 SH2B3Q9UQQ2 575 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 PLEKHM1Q9Y4G2 1056 aa12.87□□□□□ -0.35
COL6A2-204ENST00000409416 MED12Q93074 2177 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 PTPRZ1P23471 2315 aaPredicted RBP12.86□□□□□ -0.35
COL6A2-204ENST00000409416 TDRD6O60522 2096 aaKnown RBP12.86□□□□□ -0.35
COL6A2-204ENST00000409416 SUV39H1O43463 412 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 SULT1C4O75897 302 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 CH25HO95992 272 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 CYP2A6P11509 494 aaPredicted RBP12.86□□□□□ -0.35
COL6A2-204ENST00000409416 PTPN2P17706 415 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 DNAJA1P31689 397 aaKnown RBP12.86□□□□□ -0.35
COL6A2-204ENST00000409416 MLLT1Q03111 559 aaPredicted RBP12.86□□□□□ -0.35
COL6A2-204ENST00000409416 SMARCB1Q12824 385 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 HIST2H2ACQ16777 129 aaPredicted RBP12.86□□□□□ -0.35
COL6A2-204ENST00000409416 SMUG1Q53HV7 270 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 HIST2H2AA3Q6FI13 130 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 SHQ1Q6PI26 577 aaKnown RBP12.86□□□□□ -0.35
COL6A2-204ENST00000409416 BCDIN3DQ7Z5W3 292 aaKnown RBP12.86□□□□□ -0.35
COL6A2-204ENST00000409416 STX19Q8N4C7 294 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 NEURL2Q9BR09 285 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 TMEM175Q9BSA9 504 aa12.86□□□□□ -0.35
COL6A2-204ENST00000409416 TSEN34Q9BSV6 310 aaKnown RBP12.86□□□□□ -0.35
COL6A2-204ENST00000409416 TTTY10Q9BZA0 68 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 389.9 ms