RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 NPHS1O60500 1241 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 PRAMEF4O60810 478 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ULK1O75385 1050 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ESRRBO95718 433 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ONECUT2O95948 504 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 RECKO95980 971 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 CHEK2O96017 543 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 STATHP02808 62 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ZNF888P0CJ79 500 aaPredicted RBP11.24□□□□□ -0.61
SNCA-202ENST00000345009 CD22P20273 847 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 FBLP22087 321 aaKnown RBP11.24□□□□□ -0.61
SNCA-202ENST00000345009 IL10P22301 178 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 GRK2P25098 689 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 PTPN4P29074 926 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 HMOX2P30519 316 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ALDH3A1P30838 453 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ETV4P43268 484 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 RAP1GDS1P52306 607 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ARFIP1P53367 373 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ZNF33BQ06732 778 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 TRAF3Q13114 568 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 RCN2Q14257 317 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 PCLAFQ15004 111 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 NCF4Q15080 339 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 HSP90B2PQ58FF3 399 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 TOR1AIP1Q5JTV8 583 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 PRAMEF9Q5VWM5 478 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 FAM199XQ6PEV8 388 aaPredicted RBP11.24□□□□□ -0.61
SNCA-202ENST00000345009 CCDC81Q6ZN84 652 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 FRMD7Q6ZUT3 714 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 OVCH1Q7RTY7 1134 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 KIRREL3Q8IZU9 778 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 OR2L5Q8NG80 312 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ZCCHC10Q8TBK6 192 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ZNF473Q8WTR7 871 aaKnown RBP11.24□□□□□ -0.61
SNCA-202ENST00000345009 CT55Q8WUE5 264 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 GAL3ST3Q96A11 431 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 RNF31Q96EP0 1072 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 VPS50Q96JG6 964 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 C10orf90Q96M02 699 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 CNTNAP3BQ96NU0 1288 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 KCNC2Q96PR1 638 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 CDK15Q96Q40 435 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 MTERF1Q99551 399 aaKnown RBP11.24□□□□□ -0.61
SNCA-202ENST00000345009 SERPINI1Q99574 410 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 CNTNAP3Q9BZ76 1288 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 COPS7BQ9H9Q2 264 aaPredicted RBP11.24□□□□□ -0.61
SNCA-202ENST00000345009 PFDN4Q9NQP4 134 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 MAP10Q9P2G4 905 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 ZMIZ1Q9ULJ6 1067 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 PPT2Q9UMR5 302 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 MAP4K5Q9Y4K4 846 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 PCDHGA6Q9Y5G7 932 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 MAU2Q9Y6X3 613 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 LOC101059948A0A1B0GTJ6 334 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 ZNF891A8MT65 544 aaPredicted RBP11.23□□□□□ -0.61
SNCA-202ENST00000345009 TAF4O00268 1085 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 FFAR3O14843 346 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 GPR42O15529 346 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 ERI3O43414 337 aaKnown RBP11.23□□□□□ -0.61
SNCA-202ENST00000345009 ATP8B1O43520 1251 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 KLHL18O94889 574 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 HSD3B1P14060 373 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 LIFP15018 202 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 TSPAN8P19075 237 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 HSD3B2P26439 372 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 OR1D4P47884 311 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 TMPRSS3P57727 454 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 TLE3Q04726 772 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 GALNT1Q10472 559 aaPredicted RBP11.23□□□□□ -0.61
SNCA-202ENST00000345009 CUL3Q13618 768 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 AP5B1Q2VPB7 878 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 DEFB134Q4QY38 66 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 DEPDC1Q5TB30 811 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 KHDRBS2Q5VWX1 349 aaKnown RBP11.23□□□□□ -0.61
SNCA-202ENST00000345009 ZNF385CQ66K41 422 aaPredicted RBP11.23□□□□□ -0.61
SNCA-202ENST00000345009 LETMD1Q6P1Q0 360 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 SYVN1Q86TM6 617 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 TRIM42Q8IWZ5 723 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 AFAP1L2Q8N4X5 818 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 CDYL2Q8N8U2 506 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 ANKRD42Q8N9B4 389 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 OR9A4Q8NGU2 314 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 UTP15Q8TED0 518 aaKnown RBP11.23□□□□□ -0.61
SNCA-202ENST00000345009 SELENOMQ8WWX9 145 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 RGMAQ96B86 450 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 MS4A6EQ96DS6 147 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 MOCOSQ96EN8 888 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 SLC45A3Q96JT2 553 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 SH3GL2Q99962 352 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 TBCDQ9BTW9 1192 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 GATA5Q9BWX5 397 aaPredicted RBP11.23□□□□□ -0.61
SNCA-202ENST00000345009 SLC26A1Q9H2B4 701 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 GSTO2Q9H4Y5 243 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 WDR54Q9H977 334 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 BRF2Q9HAW0 419 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 MKKSQ9NPJ1 570 aaPredicted RBP11.23□□□□□ -0.61
SNCA-202ENST00000345009 DMRT3Q9NQL9 472 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 TRPC4Q9UBN4 977 aa11.23□□□□□ -0.61
SNCA-202ENST00000345009 NAALAD2Q9Y3Q0 740 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms