RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 PXDC1Q5TGL8 231 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 C16orf46Q6P387 395 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 IRF2BP1Q8IU81 584 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 MARCH10Q8NA82 808 aaPredicted RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 C10orf82Q8WW14 230 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ZNF559Q9BR84 538 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 URM1Q9BTM9 101 aaKnown RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 IGLV3-22A0A075B6J6 115 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 PDHXO00330 501 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ANXA4P09525 319 aaPredicted RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 CSF3P09919 207 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 M6PRP20645 277 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 PKLRP30613 574 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 CRISP1P54107 249 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 TAS2R46P59540 309 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 HSPA14Q0VDF9 509 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 CCDC58Q4VC31 144 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ARSHQ5FYA8 562 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ZDHHC21Q8IVQ6 265 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ACTRT3Q9BYD9 372 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 SMCHD1A6NHR9 2005 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ONECUT3O60422 494 aaPredicted RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 BMP4P12644 408 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 SELPP16109 830 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 S1PR1P21453 382 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 MRPL19P49406 292 aaKnown RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 MECP2P51608 486 aaKnown RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 GLO1Q04760 184 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 SPOCK1Q08629 439 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 DSC3Q14574 896 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 TRAM2Q15035 370 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 PPP1R3AQ16821 1122 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 MYLK3Q32MK0 819 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 Q3C1V9 767 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 FAM174BQ3ZCQ3 159 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ENPP6Q6UWR7 440 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 FAM131AQ6UXB0 335 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 FUNDC1Q8IVP5 155 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 CMTM1Q8IZ96 169 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 DAW1Q8N136 415 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 OR4F6Q8NGB9 312 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ING5Q8WYH8 240 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 FOXJ1Q92949 421 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 GRIP2Q9C0E4 1043 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 TMEM165Q9HC07 324 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 PIH1D1Q9NWS0 290 aaKnown RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 B4GALT7Q9UBV7 327 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ZNF639Q9UID6 485 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 GIMD1P0DJR0 217 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 SPIBQ01892 262 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 CAPSQ13938 189 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 PLA1AQ53H76 456 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 FAM162BQ5T6X4 162 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 OTOP3Q7RTS5 596 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 DTX3Q8N9I9 347 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 THAP6Q8TBB0 222 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 TBC1D17Q9HA65 648 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 GRHL1Q9NZI5 618 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 BORCS7-ASMTA0A0B4J1R7 106 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 LINC01387J3KSC0 135 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 OR2T1O43869 369 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 PAGE1O75459 146 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 PRKD3O94806 890 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 KITLGP21583 273 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 CRADDP78560 199 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 NAA30Q147X3 362 aaPredicted RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 CCNJQ5T5M9 372 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 TMIGD1Q6UXZ0 262 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 FIBCD1Q8N539 461 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 JPH3Q8WXH2 748 aaPredicted RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 ATG4AQ8WYN0 398 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 STRA6Q9BX79 667 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 TDP1Q9NUW8 608 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 C14orf166Q9Y224 244 aaKnown RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 F2P00734 622 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 CSF1P09603 554 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 C1QTNF8P60827 252 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 FAAP100Q0VG06 881 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 COQ8AQ8NI60 647 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ASB15Q8WXK1 588 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 TAPBPLQ9BX59 468 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 CIPCQ9C0C6 399 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 TMEM39BQ9GZU3 492 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 FAIMQ9NVQ4 179 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 OR6C2Q9NZP2 312 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 COQ6Q9Y2Z9 468 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 PAPPA2Q9BXP8 1791 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 CLDN24A6NM45 220 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 MC4RP32245 332 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 PAOXQ6QHF9 649 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 GKN2Q86XP6 184 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 TBC1D20Q96BZ9 403 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 CDKN2AIPNLQ96HQ2 116 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 FERD3LQ96RJ6 166 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 LYSMD1Q96S90 227 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 TMEM121BQ9BXQ6 578 aaPredicted RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 CHST7Q9NS84 486 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 ZNF490Q9ULM2 529 aaPredicted RBP3.89□□□□□ -1.79
USH2A-201ENST00000307340 PLCL2Q9UPR0 1127 aa3.89□□□□□ -1.79
USH2A-201ENST00000307340 PCDHB9Q9Y5E1 797 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms