RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 GIMAP2Q9UG22 337 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 ATF6P18850 670 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 ZNF763Q0D2J5 394 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 ZNF234Q14588 700 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 TSC22D1Q15714 1073 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 SLC36A3Q495N2 470 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 MLIPQ5VWP3 458 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 ZNF440Q8IYI8 595 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 GRHL3Q8TE85 626 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 POF1BQ8WVV4 589 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 PRH1P02810 166 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 HBQ1P09105 142 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 CREB5Q02930 508 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 GID4Q8IVV7 300 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 OR5AK3PQ8NH89 298 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 BMFQ96LC9 184 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 ENY2Q9NPA8 101 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 WNT6Q9Y6F9 365 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 A0A075B6Q4 140 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 BCHEP06276 602 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 GPRC6AQ5T6X5 926 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 TUBA3EQ6PEY2 450 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 GRASPQ7Z6J2 395 aaPredicted RBP18.5■□□□□ 0.55
UPF1-201ENST00000262803 ENDOVQ8N8Q3 282 aaKnown RBP18.5■□□□□ 0.55
UPF1-201ENST00000262803 ZNF565Q8N9K5 539 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 TXNDC5Q8NBS9 432 aaKnown RBP18.5■□□□□ 0.55
UPF1-201ENST00000262803 CEP76Q8TAP6 659 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 IL4I1Q96RQ9 567 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 CENPMQ9NSP4 180 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 COMMD3Q9UBI1 195 aa18.5■□□□□ 0.55
UPF1-201ENST00000262803 A0A1B0GVC2 190 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 PIRO00625 290 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 PPM1BO75688 479 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 POU6F2P78424 691 aaPredicted RBP18.49■□□□□ 0.55
UPF1-201ENST00000262803 DSG2Q14126 1118 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 SLC36A4Q6YBV0 504 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 ZNF627Q7L945 461 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 OR4K14Q8NGD5 310 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 ORAI3Q9BRQ5 295 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 NSUN3Q9H649 340 aaKnown RBP18.49■□□□□ 0.55
UPF1-201ENST00000262803 KAT6AQ92794 2004 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 TRIM64A6NGJ6 449 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 E7ESA3 106 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 DUX1O43812 170 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 KDM4BO94953 1096 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 ZNF84P51523 738 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 ZNF678Q5SXM1 525 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 TPRG1LQ5T0D9 272 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 RDH12Q96NR8 316 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 TMEM121BQ9BXQ6 578 aaPredicted RBP18.49■□□□□ 0.55
UPF1-201ENST00000262803 TM9SF3Q9HD45 589 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 MALT1Q9UDY8 824 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 C14orf166Q9Y224 244 aaKnown RBP18.49■□□□□ 0.55
UPF1-201ENST00000262803 PDE4DIPQ5VU43 2346 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 RPL10P27635 214 aaKnown RBP18.49■□□□□ 0.55
UPF1-201ENST00000262803 MOGSQ13724 837 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 RAB39AQ14964 217 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 SPANXN4Q5MJ08 99 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 GHDCQ8N2G8 530 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 NPLOC4Q8TAT6 608 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 HERC2P3Q9BVR0 1158 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 KLF15Q9UIH9 416 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 CCND3P30281 292 aaPredicted RBP18.49■□□□□ 0.55
UPF1-201ENST00000262803 MECP2P51608 486 aaKnown RBP18.49■□□□□ 0.55
UPF1-201ENST00000262803 CMTM8Q8IZV2 173 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 OR2L8Q8NGY9 312 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 OR5P2Q8WZ92 322 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 PYURFQ96I23 114 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 NEDD4LQ96PU5 975 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 RANBP9Q96S59 729 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 RIMKLBQ9ULI2 386 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 LIPT1Q9Y234 373 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 BACE2Q9Y5Z0 518 aa18.49■□□□□ 0.55
UPF1-201ENST00000262803 ACOX3O15254 700 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 MID1O15344 667 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 PTPRCAPQ14761 206 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 SF3B4Q15427 424 aaKnown RBP eCLIP18.48■□□□□ 0.555e-7■■■■□ 24.1
UPF1-201ENST00000262803 PRRT3Q5FWE3 981 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 PRAMEF17Q5VTA0 474 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 OR4E2Q8NGC2 313 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 PCYT2Q99447 389 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 MAU2Q9Y6X3 613 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 ALDOAP04075 364 aaKnown RBP18.48■□□□□ 0.55
UPF1-201ENST00000262803 HTR1AP08908 422 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 GRIA2P42262 883 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 CEACAM20Q6UY09 585 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 HSDL2Q6YN16 418 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 INO80EQ8NBZ0 244 aaPredicted RBP18.48■□□□□ 0.55
UPF1-201ENST00000262803 PPP1R14BQ96C90 147 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 PRTFDC1Q9NRG1 225 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 SCML1Q9UN30 329 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 CREG1O75629 220 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 KCNC4Q03721 635 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 TGFBIQ15582 683 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 PTCHD3Q3KNS1 767 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 CDHR3Q6ZTQ4 885 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 LOC100130705A0A1B0GUX0 176 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 BHMG1C9JSJ3 638 aaPredicted RBP18.48■□□□□ 0.55
UPF1-201ENST00000262803 FAM189A1O60320 539 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 PER3P56645 1201 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms