RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 NPPBP16860 134 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 KRT20P35900 424 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 GJA8P48165 433 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 DGKEP52429 567 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 MTAPQ13126 283 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 COX20Q5RI15 118 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 GRHL2Q6ISB3 625 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 MFSD4AQ8N468 514 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 PLA2G15Q8NCC3 412 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 OR4A15Q8NGL6 344 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 OR52J3Q8NH60 311 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 MCFD2Q8NI22 146 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 ATL1Q8WXF7 558 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 RAD9AQ99638 391 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 TM7SF3Q9NS93 570 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 SIRT5Q9NXA8 310 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 SPASTQ9UBP0 616 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 IRAK3Q9Y616 596 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 CEP290O15078 2479 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 EFCAB9A8MZ26 197 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 SCAMP2O15127 329 aaKnown RBP12.61□□□□□ -0.39
CTNS-201ENST00000046640 SLC22A1O15245 554 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 SLC16A6O15403 523 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 POP7O75817 140 aaKnown RBP12.61□□□□□ -0.39
CTNS-201ENST00000046640 DLGAP3O95886 979 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 CCDC159P0C7I6 412 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 PRPH2P23942 346 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 RYKP34925 604 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 OR1E2P47887 323 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 SERPINB10P48595 397 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 SLC35A2P78381 396 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 CSTF3Q12996 717 aaKnown RBP12.61□□□□□ -0.39
CTNS-201ENST00000046640 SLCO4C1Q6ZQN7 724 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 ZNF547Q8IVP9 402 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 OR6Q1Q8NGQ2 317 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 DTD2Q96FN9 168 aa12.61□□□□□ -0.39
CTNS-201ENST00000046640 SAMD4AQ9UPU9 718 aaKnown RBP12.61□□□□□ -0.39
CTNS-201ENST00000046640 CAB39Q9Y376 341 aaPredicted RBP12.61□□□□□ -0.39
CTNS-201ENST00000046640 SCAMP1O15126 338 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 HSMCR30P0CW71 290 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 ETFAP13804 333 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 ZNF8P17098 575 aaPredicted RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 TGM1P22735 817 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 DDX6P26196 483 aaKnown RBP eCLIP12.6□□□□□ -0.39
CTNS-201ENST00000046640 HNF4AP41235 474 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 HIST2H2ACQ16777 129 aaPredicted RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 MED27Q6P2C8 311 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 TTC23LQ6PF05 361 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 SHQ1Q6PI26 577 aaKnown RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 FAM83HQ6ZRV2 1179 aaPredicted RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 NEK10Q6ZWH5 1172 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 ARMCX6Q7L4S7 300 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 ADGRD2Q7Z7M1 963 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 SERPINA11Q86U17 422 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 GPR65Q8IYL9 337 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 FAM9CQ8IZT9 166 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 SMG7Q92540 1137 aaKnown RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 ZNF707Q96C28 371 aaPredicted RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 NUS1Q96E22 293 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 RUBCNLQ9H714 662 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 ACOT13Q9NPJ3 140 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 EXO1Q9UQ84 846 aaKnown RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 ASF1AQ9Y294 204 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 FAM32AQ9Y421 112 aaKnown RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 H0YIV9 168 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 DNTTP04053 509 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 FABP3P05413 133 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 KLK1P06870 262 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 IDSP22304 550 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 TRPC1P48995 793 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 RPP38P78345 283 aaKnown RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 CAPN13Q6MZZ7 669 aaPredicted RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 PLEKHG7Q6ZR37 379 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 KIAA0907Q7Z7F0 614 aaPredicted RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 CCDC71Q8IV32 467 aaPredicted RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 POC5Q8NA72 575 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 SETD9Q8NE22 299 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 FAM83FQ8NEG4 500 aaPredicted RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 OR56A3Q8NH54 315 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 SPPL2AQ8TCT8 520 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 DYNC2LI1Q8TCX1 351 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 S100ZQ8WXG8 99 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 YIPF6Q96EC8 236 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 ROGDIQ9GZN7 287 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 TRIM39Q9HCM9 518 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 IL1RAPQ9NPH3 570 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 MAP4K5Q9Y4K4 846 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 PCDHB11Q9Y5F2 797 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 GPC6Q9Y625 555 aaPredicted RBP12.6□□□□□ -0.39
CTNS-201ENST00000046640 NINQ8N4C6 2090 aa12.6□□□□□ -0.39
CTNS-201ENST00000046640 PRR23AA6NEV1 266 aa12.59□□□□□ -0.39
CTNS-201ENST00000046640 HEPACAM2A8MVW5 462 aa12.59□□□□□ -0.39
CTNS-201ENST00000046640 PCDHGA12O60330 932 aa12.59□□□□□ -0.39
CTNS-201ENST00000046640 C6orf47O95873 294 aa12.59□□□□□ -0.39
CTNS-201ENST00000046640 GPX2P18283 190 aa12.59□□□□□ -0.39
CTNS-201ENST00000046640 HOXA9P31269 272 aa12.59□□□□□ -0.39
CTNS-201ENST00000046640 LIPAP38571 399 aa12.59□□□□□ -0.39
CTNS-201ENST00000046640 RPS3AP61247 264 aaKnown RBP12.59□□□□□ -0.39
CTNS-201ENST00000046640 HBA1P69905 142 aa12.59□□□□□ -0.39
CTNS-201ENST00000046640 TCEA2Q15560 299 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms