RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 AFAP1L2Q8N4X5 818 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 MREGQ8N565 214 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 OR51Q1Q8NH59 317 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 UTP15Q8TED0 518 aaKnown RBP14.24□□□□□ -0.13
UPF1-202ENST00000594243 ATP6V1E2Q96A05 226 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 BBC3Q96PG8 261 aaPredicted RBP14.24□□□□□ -0.13
UPF1-202ENST00000594243 CRB3Q9BUF7 120 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 ING2Q9H160 280 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 RHBGQ9H310 441 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 ACTR8Q9H981 624 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 PRM3Q9NNZ6 103 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 ACSS2Q9NR19 701 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 ADGRE2Q9UHX3 823 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 LRIT2A6NDA9 550 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 LRRC14BA6NHZ5 514 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 MKRN2OSH3BPM6 223 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 AGPSO00116 658 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 PCDH17O14917 1159 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 GALR3O60755 368 aaPredicted RBP14.23□□□□□ -0.13
UPF1-202ENST00000594243 GLRA3O75311 464 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 HEXBP07686 556 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 SBK3P0C264 359 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 SMIM10L1P0DMW3 83 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 CD22P20273 847 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 SERPINB1P30740 379 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 EMP2P54851 167 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 FOXL2P58012 376 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 MAT1AQ00266 395 aaKnown RBP14.23□□□□□ -0.13
UPF1-202ENST00000594243 KCNAB2Q13303 367 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 ATP1A4Q13733 1029 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 SYT16Q17RD7 645 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 DEFB134Q4QY38 66 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 TOR1AIP1Q5JTV8 583 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 GRHL2Q6ISB3 625 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 GOLGA7Q7Z5G4 137 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 MRGPREQ86SM8 312 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 PDSS2Q86YH6 399 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 LAS2Q8IYD9 372 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 EXD3Q8N9H8 876 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 OR2W6PQ8NHA6 318 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 SMIM10Q96HG1 83 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 FAR2Q96K12 515 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 C3orf18Q9UK00 162 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 GRID1Q9ULK0 1009 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 PCDHGA11Q9Y5H2 935 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 AHCTF1Q8WYP5 2266 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 SPTBP11277 2137 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 PTPRQQ9UMZ3 2332 aa14.23□□□□□ -0.13
UPF1-202ENST00000594243 MDC1Q14676 2089 aaKnown RBP14.22□□□□□ -0.13
UPF1-202ENST00000594243 A0A088AWK7 358 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 IDSB3KWA1 339 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 FFAR3O14843 346 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 GPR42O15529 346 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 RDH16O75452 317 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 BMP10O95393 424 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 CLDN9O95484 217 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 PCNAP12004 261 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 ZNF10P21506 573 aaPredicted RBP14.22□□□□□ -0.13
UPF1-202ENST00000594243 RAB8AP61006 207 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 SNRPNP63162 240 aaKnown RBP14.22□□□□□ -0.13
UPF1-202ENST00000594243 TGM3Q08188 693 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 RBBP7Q16576 425 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 CCDC153Q494R4 210 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 TRIM40Q6P9F5 258 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 SH2D5Q6ZV89 423 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 PPP1R32Q7Z5V6 425 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 LAPTM4BQ86VI4 370 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 MYLK4Q86YV6 388 aaPredicted RBP14.22□□□□□ -0.13
UPF1-202ENST00000594243 SLC22A9Q8IVM8 553 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 PRSS58Q8IYP2 241 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 CLEC1AQ8NC01 280 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 SRFBP1Q8NEF9 429 aaKnown RBP14.22□□□□□ -0.13
UPF1-202ENST00000594243 OR7G3Q8NG95 312 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 GAL3ST3Q96A11 431 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 REPS1Q96D71 796 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 NTMT1Q9BV86 223 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 C1QTNF3Q9BXJ4 246 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 REXO4Q9GZR2 422 aaKnown RBP14.22□□□□□ -0.13
UPF1-202ENST00000594243 KLHL31Q9H511 634 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 NOL11Q9H8H0 719 aaKnown RBP14.22□□□□□ -0.13
UPF1-202ENST00000594243 P4HTMQ9NXG6 502 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 HCN3Q9P1Z3 774 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 PCTPQ9UKL6 214 aa14.22□□□□□ -0.13
UPF1-202ENST00000594243 A8MT66 165 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 H0YIV9 168 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 SOCS6O14544 535 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 COPEO14579 308 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 CYC1P08574 325 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 KRT4P19013 534 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 ATP5F1P24539 256 aaPredicted RBP14.21□□□□□ -0.13
UPF1-202ENST00000594243 CRHR1P34998 444 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 ARL1P40616 181 aaPredicted RBP14.21□□□□□ -0.13
UPF1-202ENST00000594243 XCR1P46094 333 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 CCL11P51671 97 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 CCNG1P51959 295 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 PHEXP78562 749 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 ADPRMQ3LIE5 342 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 MFSD4BQ5TF39 518 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 CHSY3Q70JA7 882 aa14.21□□□□□ -0.13
UPF1-202ENST00000594243 VN1R5Q7Z5H4 357 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms