RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 COL26A1Q96A83 441 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 FKBP10Q96AY3 582 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 C10orf90Q96M02 699 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 GBP5Q96PP8 586 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 TMEM121BQ9BXQ6 578 aaPredicted RBP9.59□□□□□ -0.87
USP3-216ENST00000559873 MS4A8Q9BY19 250 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 DPH1Q9BZG8 443 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 SLC6A16Q9GZN6 736 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 REXO4Q9GZR2 422 aaKnown RBP9.59□□□□□ -0.87
USP3-216ENST00000559873 CLK4Q9HAZ1 481 aaKnown RBP9.59□□□□□ -0.87
USP3-216ENST00000559873 MLXIPLQ9NP71 852 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 LHX9Q9NQ69 397 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 DMRT3Q9NQL9 472 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 PFDN4Q9NQP4 134 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 DHCR7Q9UBM7 475 aaKnown RBP9.59□□□□□ -0.87
USP3-216ENST00000559873 KCND3Q9UK17 655 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 PPT2Q9UMR5 302 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 C1QTNF9BB2RNN3 333 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 H0YIG0 161 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 FOXE1O00358 373 aaPredicted RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 FFAR3O14843 346 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 GPR42O15529 346 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 ERI3O43414 337 aaKnown RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 ULK1O75385 1050 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 SEMA3DO95025 777 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 STATHP02808 62 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 C1QTNF9P0C862 333 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 UROSP10746 265 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 NR1D1P20393 614 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 PTX3P26022 381 aaPredicted RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 STAT5AP42229 794 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 RPS15P62841 145 aaKnown RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 CSTF3Q12996 717 aaKnown RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 CUL3Q13618 768 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 DSG2Q14126 1118 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 MPP2Q14168 576 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 CHI3L2Q15782 390 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 ADPRMQ3LIE5 342 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 NKAIN1Q4KMZ8 207 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 TOR1AIP1Q5JTV8 583 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 PRAMEF17Q5VTA0 474 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 C1orf189Q5VU69 101 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 BROXQ5VW32 411 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 KHDRBS2Q5VWX1 349 aaKnown RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 LETMD1Q6P1Q0 360 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 ZCCHC23Q6ZST2 131 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 RPS27LQ71UM5 84 aaKnown RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 NUDT13Q86X67 352 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 DTX1Q86Y01 620 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 GBP7Q8N8V2 638 aaPredicted RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 KCT2Q8NC54 265 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 OR2L5Q8NG80 312 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 WDR20Q8TBZ3 569 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 ADAMTS18Q8TE60 1221 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 MMABQ96EY8 250 aaPredicted RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 KCNC2Q96PR1 638 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 MTERF1Q99551 399 aaKnown RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 SERPINI1Q99574 410 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 GPR87Q9BY21 358 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 GPN2Q9H9Y4 310 aaPredicted RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 BRF2Q9HAW0 419 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 ZNF304Q9HCX3 659 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 PSD3Q9NYI0 1048 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 AHSPQ9NZD4 102 aa9.58□□□□□ -0.88
USP3-216ENST00000559873 IFT80Q9P2H3 777 aaPredicted RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 NXT1Q9UKK6 140 aaKnown RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 ZNF490Q9ULM2 529 aaPredicted RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 MDC1Q14676 2089 aaKnown RBP9.58□□□□□ -0.88
USP3-216ENST00000559873 SDK2Q58EX2 2172 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 A0A0A6YYC8 382 aaPredicted RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 LRIT2A6NDA9 550 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 I3L1I5 382 aaPredicted RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 MANBAO00462 879 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 PPP6CO00743 305 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 AZIN1O14977 448 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 B3GALT2O43825 422 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 GALR3O60755 368 aaPredicted RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 KLHL18O94889 574 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 ALBP02768 609 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 CTSBP07858 339 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 ZNF888P0CJ79 500 aaPredicted RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 SPTBP11277 2137 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 IL1RNP18510 177 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 TCN2P20062 427 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 ITGAXP20702 1163 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 BGNP21810 368 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 DLSTP36957 453 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 SSR2P43308 183 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 UCNP55089 124 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 MTTPP55157 894 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 ABCE1P61221 599 aaKnown RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 RPS13P62277 151 aaKnown RBP9.57□□□□□ -0.88
USP3-216ENST00000559873 OCA2Q04671 838 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 CLN3Q13286 438 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 DNASE1L3Q13609 305 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 NCF4Q15080 339 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 IMPG1Q17R60 797 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 AP5B1Q2VPB7 878 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 DEFB134Q4QY38 66 aa9.57□□□□□ -0.88
USP3-216ENST00000559873 ARL13AQ5H913 290 aaPredicted RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms