RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CTAGE5O15320 804 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 MAGEB2O15479 319 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 MAGEB4O15481 346 aaPredicted RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 ZNF253O75346 499 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 BAG3O95817 575 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 CD151P48509 253 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 CRYBA2P53672 197 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 IST1P53990 364 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 ARF3P61204 181 aaPredicted RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 HNRNPKP61978 463 aaKnown RBP eCLIP1.83□□□□□ -2.127e-6■□□□□ 8.5
NUP54-208ENST00000508604 ARF1P84077 181 aaKnown RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 ITPK1Q13572 414 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 SNAPC1Q16533 368 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 POM121L1PQ3SYA9 428 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 VWA2Q5GFL6 755 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 MUC21Q5SSG8 566 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 FAM205BPQ63HN1 556 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 GET4Q7L5D6 327 aaPredicted RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 KBTBD6Q86V97 674 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 ZNF595Q8IYB9 648 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 LRTM2Q8N967 370 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 OR2L5Q8NG80 312 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 OR6T1Q8NGN1 323 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 LINC01006Q8NI28 216 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 NABP1Q96AH0 204 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 SIGLEC12Q96PQ1 595 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 MYCBPQ99417 103 aaPredicted RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 CCDC94Q9BW85 323 aaPredicted RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 SUDS3Q9H7L9 328 aaPredicted RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 WDR41Q9HAD4 459 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 CDH20Q9HBT6 801 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 SLC35C2Q9NQQ7 365 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 SLC24A2Q9UI40 661 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 FBXL4Q9UKA2 621 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 SMC3Q9UQE7 1217 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 RPGRIP1LQ68CZ1 1315 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 ITIH6Q6UXX5 1313 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 RAD54L2Q9Y4B4 1467 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 A0A1W2PPQ1 181 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 BICDL2A1A5D9 508 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 MTMR11A4FU01 709 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 A6NCN8 305 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 CASTOR2A6NHX0 329 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 AGAP14A8MT82 685 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 A8MVM7 634 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 AP3D1O14617 1153 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 LATO43561 262 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 TOMM70O94826 608 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 CD1EP15812 388 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 BDNFP23560 247 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 RPL9P32969 192 aaKnown RBP1.82□□□□□ -2.12
NUP54-208ENST00000508604 HADHAP40939 763 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 BRCC3P46736 316 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 LHX1P48742 406 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 MEOX2P50222 304 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 NONOQ15233 471 aaKnown RBP eCLIP1.82□□□□□ -2.12
NUP54-208ENST00000508604 NPTX1Q15818 432 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 KNOP1Q1ED39 458 aaKnown RBP1.82□□□□□ -2.12
NUP54-208ENST00000508604 GSG1Q2KHT4 349 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 C16orf54Q6UWD8 224 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 BANPQ8N9N5 519 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 OR10S1Q8NGN2 331 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 ANKRD27Q96NW4 1050 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 PAPOLGQ9BWT3 736 aaKnown RBP1.82□□□□□ -2.12
NUP54-208ENST00000508604 DEPPQ9NTK1 212 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 TBC1D22BQ9NU19 505 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 TXNDC16Q9P2K2 825 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 KNSTRNQ9Y448 316 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 RAD50Q92878 1312 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 KIF16BQ96L93 1317 aa1.82□□□□□ -2.12
NUP54-208ENST00000508604 TRAV9-2A0A087WT02 112 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 LOC102723996A0A087X1L8 192 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 BCLAF3A2AJT9 711 aaKnown RBP1.81□□□□□ -2.12
NUP54-208ENST00000508604 RTCAO00442 366 aaKnown RBP1.81□□□□□ -2.12
NUP54-208ENST00000508604 MPHOSPH10O00566 681 aaKnown RBP1.81□□□□□ -2.12
NUP54-208ENST00000508604 FOXH1O75593 365 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 RHBDL1O75783 438 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 GFPT2O94808 682 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 SEMA4FO95754 770 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 LINGO3P0C6S8 592 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 VDRP11473 427 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 SAT1P21673 171 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 HOXD13P35453 343 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 NRIP1P48552 1158 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 TEFQ10587 303 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 TRDNQ13061 729 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 MEA1Q16626 185 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 CBWD6Q4V339 395 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 CBWD3Q5JTY5 395 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 PLEKHS1Q5SXH7 462 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 KLHL10Q6JEL2 608 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 MZT2BQ6NZ67 158 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 CFAP161Q6P656 301 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 MACC1Q6ZN28 852 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 CCDC60Q8IWA6 550 aaPredicted RBP1.81□□□□□ -2.12
NUP54-208ENST00000508604 TTC30BQ8N4P2 665 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 PROX1Q92786 737 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 NEDD4LQ96PU5 975 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 RSF1Q96T23 1441 aaPredicted RBP1.81□□□□□ -2.12
NUP54-208ENST00000508604 PI4K2AQ9BTU6 479 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms