RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TRMT61BQ9BVS5 477 aaKnown RBP11.21□□□□□ -0.61
NPHP4-204ENST00000460696 PRRG3Q9BZD7 231 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 NAA50Q9GZZ1 169 aaKnown RBP11.21□□□□□ -0.61
NPHP4-204ENST00000460696 IL37Q9NZH6 218 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 STOX2Q9P2F5 926 aaPredicted RBP11.21□□□□□ -0.61
NPHP4-204ENST00000460696 FBXO10Q9UK96 956 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 HNRNPCL2B2RXH8 293 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 SOX14O95416 240 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 PAICSP22234 425 aaKnown RBP11.21□□□□□ -0.62
NPHP4-204ENST00000460696 TIA1P31483 386 aaKnown RBP eCLIP11.21□□□□□ -0.62
NPHP4-204ENST00000460696 SMIM11AP58511 58 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 RPS26P62854 115 aaKnown RBP11.21□□□□□ -0.62
NPHP4-204ENST00000460696 RPP38P78345 283 aaKnown RBP11.21□□□□□ -0.62
NPHP4-204ENST00000460696 TIGD6Q17RP2 521 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 HMGN2P46Q86SG4 172 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 CYP4Z2PQ8N1L4 340 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 BPIFB1Q8TDL5 484 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 WFIKKN2Q8TEU8 576 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 Q96MT0 163 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 RDH12Q96NR8 316 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 REEP4Q9H6H4 257 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 PCDHB11Q9Y5F2 797 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 PARP14Q460N5 1801 aa11.21□□□□□ -0.62
NPHP4-204ENST00000460696 CACNB4O00305 520 aaPredicted RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 SLC1A7O00341 560 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 ABLIM3O94929 683 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 DNTTP04053 509 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 AOAHP28039 575 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 PDHA2P29803 388 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 TAS2R41P59536 307 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 MXD1Q05195 221 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 NFE2L1Q14494 772 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 DHCR24Q15392 516 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 FAM129CQ86XR2 697 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 CELF5Q8N6W0 485 aaKnown RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF420Q8TAQ5 688 aaPredicted RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 HMGCLL1Q8TB92 370 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 SLC9A6Q92581 669 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 GPATCH1Q9BRR8 931 aaKnown RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 SPATA5L1Q9BVQ7 753 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 LHPPQ9H008 270 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 TVP23BQ9NYZ1 205 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 PTPRFP10586 1907 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 MAGEB3O15480 346 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 ZW10O43264 779 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 NME6O75414 186 aaPredicted RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 INMTO95050 263 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 C1GALT1C1LP0DN25 315 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 PTX3P26022 381 aaPredicted RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 PTSQ03393 145 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 TARDBPQ13148 414 aaKnown RBP eCLIP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 SNAPC1Q16533 368 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 XKR7Q5GH72 579 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 EPHX4Q8IUS5 362 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 LILRA3Q8N6C8 439 aaPredicted RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 C10orf53Q8N6V4 93 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 ASB11Q8WXH4 323 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF347Q96SE7 839 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 NPLQ9BXD5 320 aaPredicted RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 XKR8Q9H6D3 395 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 DCAF13Q9NV06 445 aaKnown RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 TMEM9Q9P0T7 183 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF232Q9UNY5 417 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 NCKAP1Q9Y2A7 1128 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 ATG2BQ96BY7 2078 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 TBX1O43435 398 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 CLPXO76031 633 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 MT-ND2P03891 347 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 CDK4P11802 303 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 LHCGRP22888 699 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 HRH2P25021 359 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF829Q3KNS6 432 aaPredicted RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 MPP7Q5T2T1 576 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 PDZK1Q5T2W1 519 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 MFSD4BQ5TF39 518 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 TBPL2Q6SJ96 375 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 GALNT13Q8IUC8 556 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 NAGSQ8N159 534 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 CHCHD4Q8N4Q1 142 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 CPA6Q8N4T0 437 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 OXR1Q8N573 874 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 ZBED6CLQ96FA7 236 aaPredicted RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 FUNDC2Q9BWH2 189 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 POLR2J3Q9H1A7 115 aaKnown RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 P2RY12Q9H244 342 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 RDH14Q9HBH5 336 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 TRIM39Q9HCM9 518 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 SARDHQ9UL12 918 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 YBX2Q9Y2T7 364 aaKnown RBP11.2□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF780BQ9Y6R6 833 aa11.2□□□□□ -0.62
NPHP4-204ENST00000460696 AP3D1O14617 1153 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 SLC16A5O15375 505 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 TSPAN12O95859 305 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 B3GALT4O96024 378 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 APODP05090 189 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 IL3P08700 152 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 CCNYL3P0C7X3 344 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 SHMT2P34897 504 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 IFNGR2P38484 337 aa11.19□□□□□ -0.62
NPHP4-204ENST00000460696 OLR1P78380 273 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms