RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 FAM78AQ5JUQ0 283 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 GALNT18Q6P9A2 607 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 TERB1Q8NA31 727 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 ATG16L2Q8NAA4 619 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 FBXO15Q8NCQ5 510 aaPredicted RBP18.59■□□□□ 0.57
COL9A3-201ENST00000343916 OR5AK3PQ8NH89 298 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.59■□□□□ 0.57
COL9A3-201ENST00000343916 SLC5A11Q8WWX8 675 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 TBC1D20Q96BZ9 403 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 REPS1Q96D71 796 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 TRIT1Q9H3H1 467 aaKnown RBP18.59■□□□□ 0.57
COL9A3-201ENST00000343916 KIF17Q9P2E2 1029 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 ASF1AQ9Y294 204 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 DGKBQ9Y6T7 804 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 RNASET2O00584 256 aaKnown RBP18.58■□□□□ 0.57
COL9A3-201ENST00000343916 TPP2P29144 1249 aaPredicted RBP18.58■□□□□ 0.57
COL9A3-201ENST00000343916 MVDP53602 400 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 TMBIM6P55061 237 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 GABARAPL2P60520 117 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 ELAVL3Q14576 367 aaKnown RBP18.58■□□□□ 0.57
COL9A3-201ENST00000343916 MPEG1Q2M385 716 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 ADGRD2Q7Z7M1 963 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 B3GNT8Q7Z7M8 397 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 MMP21Q8N119 569 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 OR5AR1Q8NGP9 310 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 TBC1D15Q8TC07 691 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 UBE2FQ969M7 185 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 CNDP2Q96KP4 475 aaKnown RBP18.58■□□□□ 0.57
COL9A3-201ENST00000343916 C7orf34Q96L11 122 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 EFCAB11Q9BUY7 163 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 REEP4Q9H6H4 257 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 REEP1Q9H902 201 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 ZNF451Q9Y4E5 1061 aa18.58■□□□□ 0.57
COL9A3-201ENST00000343916 CFAP20Q9Y6A4 193 aaKnown RBP18.58■□□□□ 0.57
COL9A3-201ENST00000343916 KIAA1549LQ6ZVL6 1849 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 EDDM13A0A1B0GTR0 161 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 TRIM64BA6NI03 449 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 AXIN1O15169 862 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 SUV39H1O43463 412 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 KLHL18O94889 574 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 KLK1P06870 262 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 PNLIPRP1P54315 467 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 TAS2R50P59544 299 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 SMN1Q16637 294 aaKnown RBP18.58■□□□□ 0.56
COL9A3-201ENST00000343916 PRSS53Q2L4Q9 553 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 C11orf96Q7Z7L8 435 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 LAS2Q8IYD9 372 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 TTC29Q8NA56 475 aaPredicted RBP18.58■□□□□ 0.56
COL9A3-201ENST00000343916 TMIEQ8NEW7 156 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 PPP1R14BQ96C90 147 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 ZDHHC5Q9C0B5 715 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 CCDC177Q9NQR7 707 aaPredicted RBP18.58■□□□□ 0.56
COL9A3-201ENST00000343916 TMEM9Q9P0T7 183 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 ZNF282Q9UDV7 671 aaPredicted RBP18.58■□□□□ 0.56
COL9A3-201ENST00000343916 GMPPBQ9Y5P6 360 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 SNX5Q9Y5X3 404 aa18.58■□□□□ 0.56
COL9A3-201ENST00000343916 SZT2Q5T011 3432 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 UGT2B11O75310 529 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 PCMT1P22061 227 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 ACADLP28330 430 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 ITGA1P56199 1179 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 NXPE4Q6UWF7 544 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 FBLIM1Q8WUP2 373 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 SLC35A5Q9BS91 424 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 FUNDC2Q9BWH2 189 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 KRT84Q9NSB2 600 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 TBC1D23Q9NUY8 699 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 SPASTQ9UBP0 616 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 FOXE1O00358 373 aaPredicted RBP18.57■□□□□ 0.56
COL9A3-201ENST00000343916 FURINP09958 794 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 HTR1BP28222 390 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 C2orf80Q0P641 193 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 IL18R1Q13478 541 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 TUBA3CQ13748 450 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 CYP27C1Q4G0S4 372 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 PAGE2BQ5JRK9 111 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 C11orf65Q8NCR3 313 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 SPPL2AQ8TCT8 520 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 WDR34Q96EX3 536 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 BHLHE41Q9C0J9 482 aaPredicted RBP18.57■□□□□ 0.56
COL9A3-201ENST00000343916 RUBCNLQ9H714 662 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 RASSF1Q9NS23 344 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 TBCCD1Q9NVR7 557 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 ATP6V1HQ9UI12 483 aa18.57■□□□□ 0.56
COL9A3-201ENST00000343916 RRM2P31350 389 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 OR1E2P47887 323 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 EMX1Q04741 257 aaPredicted RBP18.56■□□□□ 0.56
COL9A3-201ENST00000343916 TOP3AQ13472 1001 aaPredicted RBP18.56■□□□□ 0.56
COL9A3-201ENST00000343916 HIST2H2ACQ16777 129 aaPredicted RBP18.56■□□□□ 0.56
COL9A3-201ENST00000343916 HIST2H2AA3Q6FI13 130 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 TSEN54Q7Z6J9 526 aaKnown RBP18.56■□□□□ 0.56
COL9A3-201ENST00000343916 CPA6Q8N4T0 437 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 OR2L2Q8NH16 312 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 C16orf78Q8WTQ4 265 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 MUL1Q969V5 352 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 PPCDCQ96CD2 204 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 ITM2CQ9NQX7 267 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 DYRK4Q9NR20 520 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 TM7SF3Q9NS93 570 aa18.56■□□□□ 0.56
COL9A3-201ENST00000343916 TMEM184CQ9NVA4 438 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms