RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SP3Q02447 781 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SERINC3Q13530 473 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 RNLSQ5VYX0 342 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 DPY19L2P1Q6NXN4 242 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 RFPL4BQ6ZWI9 263 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF565Q8N9K5 539 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ELP5Q8TE02 316 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SOCS4Q8WXH5 440 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 JSRP1Q96MG2 331 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 C5orf34Q96MH7 638 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 KREMEN1Q96MU8 473 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SPO11Q9Y5K1 396 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ALG5Q9Y673 324 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 F8VP50 259 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ADAM10O14672 748 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 EGFP01133 1207 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 PTPRAP18433 802 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 EPHA3P29320 983 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 MAGEA11P43364 429 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 MAP2K4P45985 399 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 KCNJ5P48544 419 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ACOT2P49753 483 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 PGDP52209 483 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 FAM98CQ17RN3 349 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 HENMT1Q5T8I9 393 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SLC36A4Q6YBV0 504 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 GAREM2Q75VX8 874 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 LRP10Q7Z4F1 713 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 NOXA1Q86UR1 476 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 COMTD1Q86VU5 262 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ZDHHC21Q8IVQ6 265 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 TOMM5Q8N4H5 51 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 FBXO32Q969P5 355 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 MFSD3Q96ES6 412 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 PDLIM5Q96HC4 596 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ACBD6Q9BR61 282 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 NPLQ9BXD5 320 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF334Q9HCZ1 680 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 MAFBQ9Y5Q3 323 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 A0A0A6YYH2 397 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 LOC100130705A0A1B0GUX0 176 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 A6NJ64 397 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 INMT-MINDY4F8WBC2 141 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 SEC14L2O76054 403 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 IFNA1P01562 189 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 RAB3AP20336 220 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 IVDP26440 423 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 IDH2P48735 452 aaKnown RBP5.09□□□□□ -1.6
SCN1A-201ENST00000303395 RHOAP61586 193 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 TLE3Q04726 772 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 MEF2DQ14814 521 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 NPTX1Q15818 432 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 NRF1Q16656 503 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-201ENST00000303395 NUP54Q7Z3B4 507 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 KCTD20Q7Z5Y7 419 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 L3MBTL4Q8NA19 623 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 ARRDC4Q8NCT1 418 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 C2CD4AQ8NCU7 369 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-201ENST00000303395 OR2L2Q8NH16 312 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 UQCC2Q9BRT2 126 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 TRPV2Q9Y5S1 764 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 ENDOD1O94919 500 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 RHCEP18577 417 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 ACVR2AP27037 513 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 CACNA1DQ01668 2161 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 UBAP2LQ14157 1087 aaKnown RBP5.09□□□□□ -1.6
SCN1A-201ENST00000303395 MPPE1Q53F39 396 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 SPIN3Q5JUX0 258 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 MLIPQ5VWP3 458 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 ARSKQ6UWY0 536 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF598Q86UK7 904 aaKnown RBP5.09□□□□□ -1.6
SCN1A-201ENST00000303395 PROKR2Q8NFJ6 384 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 UBTD2Q8WUN7 234 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 PYURFQ96I23 114 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 SEPHS2Q99611 448 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 NDC1Q9BTX1 674 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 CEP41Q9BYV8 373 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 HIF1ANQ9NWT6 349 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 WASF2Q9Y6W5 498 aa5.09□□□□□ -1.6
SCN1A-201ENST00000303395 ANKRD36CQ5JPF3 1778 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MIA3Q5JRA6 1907 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 OR2AT4A6NND4 320 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 TNFRSF10AO00220 468 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 LGR5O75473 907 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ACTL6BO94805 426 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 STSP08842 583 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MPC1LP0DKB6 136 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 DDX6P26196 483 aaKnown RBP eCLIP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 TAP2Q03519 686 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MFSD10Q14728 455 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 HECTD2Q5U5R9 776 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ALG1LQ6GMV1 187 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 RAB12Q6IQ22 244 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MSANTD2Q6P1R3 559 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 C19orf35Q6ZS72 473 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ELMOD2Q8IZ81 293 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF808Q8N4W9 903 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ABHD11Q8NFV4 315 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SCGB1C1Q8TD33 95 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 199.3 ms