RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UPF3	YGR072W	PLB1	P39105	664 aa		4.92	□□□□□ -1.62
UPF3	YGR072W	CNN1	P43618	361 aa		4.92	□□□□□ -1.62
UPF3	YGR072W	MRL1	Q06815	381 aa		4.92	□□□□□ -1.62
UPF3	YGR072W	MOH1	P38191	138 aa		4.91	□□□□□ -1.62
UPF3	YGR072W	MET10	P39692	1035 aa		4.91	□□□□□ -1.62
UPF3	YGR072W	ATG13	Q06628	738 aa		4.91	□□□□□ -1.62
UPF3	YGR072W	NOP12	Q08208	459 aa	Known RBP	4.91	□□□□□ -1.62
UPF3	YGR072W	CYC8	P14922	966 aa		4.9	□□□□□ -1.63
UPF3	YGR072W	DBP5	P20449	482 aa	Known RBP	4.9	□□□□□ -1.63
UPF3	YGR072W	BAS1	P22035	811 aa		4.9	□□□□□ -1.63
UPF3	YGR072W	OAR1	P35731	278 aa		4.9	□□□□□ -1.63
UPF3	YGR072W	MPH1	P40562	993 aa		4.89	□□□□□ -1.63
UPF3	YGR072W	MSC2	Q03455	724 aa		4.89	□□□□□ -1.63
UPF3	YGR072W	RPS26A	P39938	119 aa	Known RBP	4.88	□□□□□ -1.63
UPF3	YGR072W	RPS26B	P39939	119 aa	Known RBP	4.88	□□□□□ -1.63
UPF3	YGR072W	POL32	P47110	350 aa		4.88	□□□□□ -1.63
UPF3	YGR072W	GCR1	P07261	785 aa		4.87	□□□□□ -1.63
UPF3	YGR072W	ACE2	P21192	770 aa		4.87	□□□□□ -1.63
UPF3	YGR072W	MGE1	P38523	228 aa		4.87	□□□□□ -1.63
UPF3	YGR072W	HRR25	P29295	494 aa	Known RBP	4.86	□□□□□ -1.63
UPF3	YGR072W	PAM1	P37304	830 aa	Known RBP	4.86	□□□□□ -1.63
UPF3	YGR072W	UGA2	P38067	497 aa		4.86	□□□□□ -1.63
UPF3	YGR072W	MXR1	P40029	184 aa		4.86	□□□□□ -1.63
UPF3	YGR072W	UBA2	P52488	636 aa		4.86	□□□□□ -1.63
UPF3	YGR072W	PEP7	P32609	515 aa		4.85	□□□□□ -1.63
UPF3	YGR072W	SVF1	Q05515	481 aa		4.85	□□□□□ -1.63
UPF3	YGR072W	TPO1	Q07824	586 aa		4.85	□□□□□ -1.63
UPF3	YGR072W	BI4	P03879	638 aa		4.84	□□□□□ -1.63
UPF3	YGR072W	RPL11A	P0C0W9	174 aa	Known RBP	4.84	□□□□□ -1.63
UPF3	YGR072W	MCM7	P38132	845 aa		4.84	□□□□□ -1.63
UPF3	YGR072W	RRT14	P40470	206 aa		4.84	□□□□□ -1.63
UPF3	YGR072W	MND2	P40577	368 aa		4.84	□□□□□ -1.63
UPF3	YGR072W	TIF35	Q04067	274 aa	Known RBP	4.84	□□□□□ -1.63
UPF3	YGR072W	AIM39	Q08223	395 aa		4.84	□□□□□ -1.63
UPF3	YGR072W	ACM1	Q08981	209 aa		4.84	□□□□□ -1.63
UPF3	YGR072W	GNT1	Q12096	491 aa		4.84	□□□□□ -1.63
UPF3	YGR072W	RPL11B	Q3E757	174 aa	Predicted RBP	4.84	□□□□□ -1.63
UPF3	YGR072W	NAP1	P25293	417 aa	Known RBP	4.83	□□□□□ -1.64
UPF3	YGR072W	MCM2	P29469	868 aa		4.83	□□□□□ -1.64
UPF3	YGR072W	RER2	P35196	286 aa		4.83	□□□□□ -1.64
UPF3	YGR072W	HFM1	P51979	1187 aa		4.83	□□□□□ -1.64
UPF3	YGR072W	PFK1	P16861	987 aa	Known RBP	4.82	□□□□□ -1.64
UPF3	YGR072W	DBP2	P24783	546 aa	Known RBP	4.82	□□□□□ -1.64
UPF3	YGR072W	SLA2	P33338	968 aa		4.82	□□□□□ -1.64
UPF3	YGR072W	IOC3	P43596	787 aa		4.82	□□□□□ -1.64
UPF3	YGR072W	MET12	P46151	657 aa		4.82	□□□□□ -1.64
UPF3	YGR072W	EXG2	P52911	562 aa		4.82	□□□□□ -1.64
UPF3	YGR072W	GEM1	P39722	662 aa		4.81	□□□□□ -1.64
UPF3	YGR072W	RRP15	Q06511	250 aa	Predicted RBP	4.81	□□□□□ -1.64
UPF3	YGR072W	BDF2	Q07442	638 aa		4.81	□□□□□ -1.64
UPF3	YGR072W	ADY3	Q07732	790 aa		4.81	□□□□□ -1.64
UPF3	YGR072W	HIS5	P07172	385 aa		4.8	□□□□□ -1.64
UPF3	YGR072W	ATE1	P16639	503 aa		4.8	□□□□□ -1.64
UPF3	YGR072W	RAD27	P26793	382 aa		4.8	□□□□□ -1.64
UPF3	YGR072W	POA1	P38218	177 aa		4.8	□□□□□ -1.64
UPF3	YGR072W	ATF1	P40353	525 aa		4.8	□□□□□ -1.64
UPF3	YGR072W	SNM1	P40993	198 aa		4.8	□□□□□ -1.64
UPF3	YGR072W	SPR28	Q04921	423 aa		4.8	□□□□□ -1.64
UPF3	YGR072W	THS1	P04801	734 aa	Known RBP	4.79	□□□□□ -1.64
UPF3	YGR072W	ZRG8	P40021	1076 aa		4.79	□□□□□ -1.64
UPF3	YGR072W	OYE2	Q03558	400 aa	Known RBP	4.79	□□□□□ -1.64
UPF3	YGR072W	XYL2	Q07993	356 aa		4.79	□□□□□ -1.64
UPF3	YGR072W	RTT10	Q08924	1013 aa		4.79	□□□□□ -1.64
UPF3	YGR072W	PNT1	P38969	423 aa		4.78	□□□□□ -1.64
UPF3	YGR072W	CHA4	P43634	648 aa		4.78	□□□□□ -1.64
UPF3	YGR072W	YJR107W	P47145	328 aa		4.78	□□□□□ -1.64
UPF3	YGR072W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
UPF3	YGR072W	KCS1	Q12494	1050 aa		4.78	□□□□□ -1.64
UPF3	YGR072W	ENA1	P13587	1091 aa		4.77	□□□□□ -1.65
UPF3	YGR072W	FYV10	P40492	516 aa		4.77	□□□□□ -1.65
UPF3	YGR072W	ENA2	Q01896	1091 aa		4.77	□□□□□ -1.65
UPF3	YGR072W	LGE1	Q02796	332 aa	Known RBP	4.77	□□□□□ -1.65
UPF3	YGR072W	ESF1	Q06344	628 aa	Known RBP	4.77	□□□□□ -1.65
UPF3	YGR072W	SPP382	Q06411	708 aa	Predicted RBP	4.77	□□□□□ -1.65
UPF3	YGR072W	ENA5	Q12691	1091 aa		4.77	□□□□□ -1.65
UPF3	YGR072W	MTC3	P53077	123 aa		4.76	□□□□□ -1.65
UPF3	YGR072W	LAS17	Q12446	633 aa		4.76	□□□□□ -1.65
UPF3	YGR072W	RPP2A	P05319	106 aa	Known RBP	4.75	□□□□□ -1.65
UPF3	YGR072W	YAP1801	P38856	637 aa		4.75	□□□□□ -1.65
UPF3	YGR072W	TMN2	Q04562	672 aa		4.75	□□□□□ -1.65
UPF3	YGR072W	TMA46	Q12000	345 aa	Known RBP	4.75	□□□□□ -1.65
UPF3	YGR072W	QRI1	P43123	477 aa	Known RBP	4.74	□□□□□ -1.65
UPF3	YGR072W	ORC1	P54784	914 aa	Predicted RBP	4.74	□□□□□ -1.65
UPF3	YGR072W	RMD1	Q03441	430 aa		4.74	□□□□□ -1.65
UPF3	YGR072W	JIP5	Q06214	492 aa	Predicted RBP	4.74	□□□□□ -1.65
UPF3	YGR072W	YLR040C	Q07988	224 aa		4.74	□□□□□ -1.65
UPF3	YGR072W	TRP2	P00899	507 aa	Known RBP	4.73	□□□□□ -1.65
UPF3	YGR072W	LYP1	P32487	611 aa		4.73	□□□□□ -1.65
UPF3	YGR072W	YGR012W	P53206	393 aa		4.73	□□□□□ -1.65
UPF3	YGR072W	YOL073C	Q08232	322 aa		4.73	□□□□□ -1.65
UPF3	YGR072W	OSW2	Q12202	724 aa		4.73	□□□□□ -1.65
UPF3	YGR072W	EFT1	P32324	842 aa	Known RBP	4.72	□□□□□ -1.65
UPF3	YGR072W	NNF1	P47149	201 aa		4.72	□□□□□ -1.65
UPF3	YGR072W	CDA1	Q06702	301 aa		4.72	□□□□□ -1.65
UPF3	YGR072W	YPL066W	Q12194	479 aa		4.72	□□□□□ -1.65
UPF3	YGR072W	SPE1	P08432	466 aa		4.71	□□□□□ -1.66
UPF3	YGR072W	INO1	P11986	533 aa		4.71	□□□□□ -1.66
UPF3	YGR072W	CLN2	P20438	545 aa		4.71	□□□□□ -1.66
UPF3	YGR072W	DUT1	P33317	147 aa		4.71	□□□□□ -1.66
UPF3	YGR072W	MOT2	P34909	587 aa	Known RBP	4.71	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 16.8 ms