RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MAPTP10636 758 aaKnown RBP2.16□□□□□ -2.06
VPS35-212ENST00000640313 ALAS2P22557 587 aa2.16□□□□□ -2.06
VPS35-212ENST00000640313 GTF2E1P29083 439 aaPredicted RBP2.16□□□□□ -2.06
VPS35-212ENST00000640313 SCTRP47872 440 aa2.16□□□□□ -2.06
VPS35-212ENST00000640313 MCCD1P59942 119 aaPredicted RBP2.16□□□□□ -2.06
VPS35-212ENST00000640313 LAMC2Q13753 1193 aa2.16□□□□□ -2.06
VPS35-212ENST00000640313 MBTPS1Q14703 1052 aa2.16□□□□□ -2.06
VPS35-212ENST00000640313 GRIK4Q16099 956 aa2.16□□□□□ -2.06
VPS35-212ENST00000640313 SLC51AQ86UW1 340 aa2.16□□□□□ -2.06
VPS35-212ENST00000640313 TXNRD3Q86VQ6 643 aa2.16□□□□□ -2.06
VPS35-212ENST00000640313 EPS8L1Q8TE68 723 aa2.16□□□□□ -2.06
VPS35-212ENST00000640313 RHBDD1Q8TEB9 315 aa2.16□□□□□ -2.06
VPS35-212ENST00000640313 LENG1Q96BZ8 264 aaPredicted RBP2.16□□□□□ -2.06
VPS35-212ENST00000640313 SSBP4Q9BWG4 385 aaPredicted RBP2.16□□□□□ -2.06
VPS35-212ENST00000640313 ADARB2-AS1A8MUL3 147 aa2.15□□□□□ -2.07
VPS35-212ENST00000640313 NID1P14543 1247 aa2.15□□□□□ -2.07
VPS35-212ENST00000640313 SELPP16109 830 aa2.15□□□□□ -2.07
VPS35-212ENST00000640313 IRAK1P51617 712 aa2.15□□□□□ -2.07
VPS35-212ENST00000640313 PCBP4P57723 403 aaKnown RBP2.15□□□□□ -2.07
VPS35-212ENST00000640313 NRG1Q02297 640 aaPredicted RBP2.15□□□□□ -2.07
VPS35-212ENST00000640313 TMEM214Q6NUQ4 689 aaKnown RBP2.15□□□□□ -2.07
VPS35-212ENST00000640313 PPARGC1BQ86YN6 1023 aaKnown RBP2.15□□□□□ -2.07
VPS35-212ENST00000640313 KRTAP4-11Q9BYQ6 195 aa2.15□□□□□ -2.07
VPS35-212ENST00000640313 ESF1Q9H501 851 aaKnown RBP2.15□□□□□ -2.07
VPS35-212ENST00000640313 ZBBXA8MT70 800 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 FAM229AH3BQW9 127 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 M0R082 166 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 SIN3BO75182 1162 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 FAM157BP0CG42 384 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 TAL1P17542 331 aaPredicted RBP2.14□□□□□ -2.07
VPS35-212ENST00000640313 CD33P20138 364 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 ESCO1Q5FWF5 840 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 FBXO31Q5XUX0 539 aaPredicted RBP2.14□□□□□ -2.07
VPS35-212ENST00000640313 TBC1D9Q6ZT07 1266 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 MICALL1Q8N3F8 863 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 ZNF417Q8TAU3 575 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 TP53INP1Q96A56 240 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 ZNF587Q96SQ5 575 aaPredicted RBP2.14□□□□□ -2.07
VPS35-212ENST00000640313 KRTAP17-1Q9BYP8 105 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 RTN4Q9NQC3 1192 aaKnown RBP2.14□□□□□ -2.07
VPS35-212ENST00000640313 RAB6BQ9NRW1 208 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 PCMTD2Q9NV79 361 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 POLR3EQ9NVU0 708 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 MARK1Q9P0L2 795 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 PRR12Q9ULL5 1215 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 STARD13Q9Y3M8 1113 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 RNF114Q9Y508 228 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 PCDHB9Q9Y5E1 797 aa2.14□□□□□ -2.07
VPS35-212ENST00000640313 A0A1W2PNR3 127 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 DCDC2BA2VCK2 349 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 KHNYNO15037 678 aaKnown RBP2.13□□□□□ -2.07
VPS35-212ENST00000640313 EFSO43281 561 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 ATP4AP20648 1035 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 JAG1P78504 1218 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 SAMD5Q5TGI4 173 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 C20orf204Q6ZNR8 217 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 ILDR2Q71H61 639 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 ZC3H15Q8WU90 426 aaKnown RBP2.13□□□□□ -2.07
VPS35-212ENST00000640313 ZNF592Q92610 1267 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 TNFRSF25Q93038 417 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 AK7Q96M32 723 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 GNL3Q9BVP2 549 aaKnown RBP eCLIP2.13□□□□□ -2.07
VPS35-212ENST00000640313 KRTAP4-5Q9BYR2 181 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 HMX1Q9NP08 348 aaPredicted RBP2.13□□□□□ -2.07
VPS35-212ENST00000640313 PCDHB11Q9Y5F2 797 aa2.13□□□□□ -2.07
VPS35-212ENST00000640313 A0A0A0MRY4 1105 aa2.12□□□□□ -2.07
VPS35-212ENST00000640313 AP1G2O75843 785 aa2.12□□□□□ -2.07
VPS35-212ENST00000640313 ALBP02768 609 aa2.12□□□□□ -2.07
VPS35-212ENST00000640313 FBXO45P0C2W1 286 aa2.12□□□□□ -2.07
VPS35-212ENST00000640313 CD97P48960 835 aa2.12□□□□□ -2.07
VPS35-212ENST00000640313 SKIV2LQ15477 1246 aaKnown RBP2.12□□□□□ -2.07
VPS35-212ENST00000640313 TRAPPC3LQ5T215 181 aa2.12□□□□□ -2.07
VPS35-212ENST00000640313 SYT9Q86SS6 491 aa2.12□□□□□ -2.07
VPS35-212ENST00000640313 ZIC5Q96T25 663 aa2.12□□□□□ -2.07
VPS35-212ENST00000640313 ATP1B4Q9UN42 357 aaPredicted RBP2.12□□□□□ -2.07
VPS35-212ENST00000640313 MYCP01106 439 aaPredicted RBP2.11□□□□□ -2.07
VPS35-212ENST00000640313 PLA2G4AP47712 749 aa2.11□□□□□ -2.07
VPS35-212ENST00000640313 PDE4DQ08499 809 aa2.11□□□□□ -2.07
VPS35-212ENST00000640313 ARSJQ5FYB0 599 aaPredicted RBP2.11□□□□□ -2.07
VPS35-212ENST00000640313 C8orf86Q6ZUL3 223 aa2.11□□□□□ -2.07
VPS35-212ENST00000640313 NIFKQ9BYG3 293 aaKnown RBP2.11□□□□□ -2.07
VPS35-212ENST00000640313 TRIM34Q9BYJ4 488 aa2.11□□□□□ -2.07
VPS35-212ENST00000640313 STRN4Q9NRL3 753 aa2.11□□□□□ -2.07
VPS35-212ENST00000640313 ZDHHC3Q9NYG2 299 aa2.11□□□□□ -2.07
VPS35-212ENST00000640313 OAS3Q9Y6K5 1087 aaKnown RBP2.11□□□□□ -2.07
VPS35-212ENST00000640313 KIAA1324LA8MWY0 1029 aaPredicted RBP2.1□□□□□ -2.07
VPS35-212ENST00000640313 LILRB5O75023 590 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 USP17L8P0C7I0 530 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 TATP17735 454 aaPredicted RBP2.1□□□□□ -2.07
VPS35-212ENST00000640313 SSTR4P31391 388 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 GP2P55259 537 aaKnown RBP2.1□□□□□ -2.07
VPS35-212ENST00000640313 RAC1P63000 192 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 PLCB2Q00722 1185 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 TLR1Q15399 786 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 SHISA2Q6UWI4 295 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 PRR23CQ6ZRP0 262 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 ZNF295-AS1Q8N0V1 137 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 PROCA1Q8NCQ7 364 aaPredicted RBP2.1□□□□□ -2.07
VPS35-212ENST00000640313 WFDC12Q8WWY7 111 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 AIDAQ96BJ3 306 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 164.1 ms