RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SLC4A9Q96Q91 983 aa23.65■■□□□ 1.38
CLN3-239ENST00000628023 MIS18AQ9NYP9 233 aa23.65■■□□□ 1.38
CLN3-239ENST00000628023 TSPYL4Q9UJ04 414 aa23.64■■□□□ 1.37
CLN3-239ENST00000628023 UBR2Q8IWV8 1755 aa23.64■■□□□ 1.37
CLN3-239ENST00000628023 GOLGB1Q14789 3259 aaKnown RBP23.64■■□□□ 1.37
CLN3-239ENST00000628023 KCNQ3O43525 872 aa23.63■■□□□ 1.37
CLN3-239ENST00000628023 ADRA2BP18089 450 aa23.63■■□□□ 1.37
CLN3-239ENST00000628023 NLGN1Q8N2Q7 840 aa23.63■■□□□ 1.37
CLN3-239ENST00000628023 ZNF496Q96IT1 587 aaPredicted RBP23.63■■□□□ 1.37
CLN3-239ENST00000628023 LAS1LQ9Y4W2 734 aaKnown RBP23.63■■□□□ 1.37
CLN3-239ENST00000628023 ZNF831Q5JPB2 1677 aa23.63■■□□□ 1.37
CLN3-239ENST00000628023 CALD1Q05682 793 aaKnown RBP23.62■■□□□ 1.37
CLN3-239ENST00000628023 CNTNAP4Q9C0A0 1308 aa23.61■■□□□ 1.37
CLN3-239ENST00000628023 GIGYF1O75420 1035 aaPredicted RBP23.61■■□□□ 1.37
CLN3-239ENST00000628023 MMP10P09238 476 aa23.61■■□□□ 1.37
CLN3-239ENST00000628023 C1QTNF8P60827 252 aa23.61■■□□□ 1.37
CLN3-239ENST00000628023 DNAJC10Q8IXB1 793 aa23.61■■□□□ 1.37
CLN3-239ENST00000628023 VSIG10Q8N0Z9 540 aa23.61■■□□□ 1.37
CLN3-239ENST00000628023 SALL2Q9Y467 1007 aaPredicted RBP23.61■■□□□ 1.37
CLN3-239ENST00000628023 HEG1Q9ULI3 1381 aa23.61■■□□□ 1.37
CLN3-239ENST00000628023 TJP1Q07157 1748 aa23.6■■□□□ 1.37
CLN3-239ENST00000628023 RPS6KA4O75676 772 aa23.6■■□□□ 1.37
CLN3-239ENST00000628023 RFC4P35249 363 aa23.6■■□□□ 1.37
CLN3-239ENST00000628023 ARHGEF1Q92888 912 aaKnown RBP23.59■■□□□ 1.37
CLN3-239ENST00000628023 COL5A3P25940 1745 aaPredicted RBP23.59■■□□□ 1.37
CLN3-239ENST00000628023 CICQ96RK0 1608 aaPredicted RBP23.59■■□□□ 1.37
CLN3-239ENST00000628023 KDM3BQ7LBC6 1761 aa23.58■■□□□ 1.37
CLN3-239ENST00000628023 BABAM1Q9NWV8 329 aa23.58■■□□□ 1.37
CLN3-239ENST00000628023 CCDC27Q2M243 656 aa23.57■■□□□ 1.36
CLN3-239ENST00000628023 STARD3NLO95772 234 aa23.56■■□□□ 1.36
CLN3-239ENST00000628023 CRKLP46109 303 aaKnown RBP23.56■■□□□ 1.36
CLN3-239ENST00000628023 TEX13AQ9BXU3 409 aaPredicted RBP23.56■■□□□ 1.36
CLN3-239ENST00000628023 SNRPA1P09661 255 aaKnown RBP23.55■■□□□ 1.36
CLN3-239ENST00000628023 NCBP3Q53F19 620 aaKnown RBP23.55■■□□□ 1.36
CLN3-239ENST00000628023 WWC1Q8IX03 1113 aa23.55■■□□□ 1.36
CLN3-239ENST00000628023 TGFB2P61812 414 aa23.54■■□□□ 1.36
CLN3-239ENST00000628023 CFAP44Q96MT7 982 aa23.54■■□□□ 1.36
CLN3-239ENST00000628023 CCDC87Q9NVE4 849 aa23.54■■□□□ 1.36
CLN3-239ENST00000628023 IFT57Q9NWB7 429 aa23.54■■□□□ 1.36
CLN3-239ENST00000628023 WWC3Q9ULE0 1092 aa23.54■■□□□ 1.36
CLN3-239ENST00000628023 PARP3Q9Y6F1 533 aa23.54■■□□□ 1.36
CLN3-239ENST00000628023 CHL1O00533 1208 aa23.53■■□□□ 1.36
CLN3-239ENST00000628023 CYP19A1P11511 503 aaPredicted RBP23.53■■□□□ 1.36
CLN3-239ENST00000628023 GYS1P13807 737 aa23.53■■□□□ 1.36
CLN3-239ENST00000628023 EIF4A1P60842 406 aaKnown RBP23.53■■□□□ 1.36
CLN3-239ENST00000628023 GNAI1P63096 354 aa23.53■■□□□ 1.36
CLN3-239ENST00000628023 NGEFQ8N5V2 710 aa23.53■■□□□ 1.36
CLN3-239ENST00000628023 PRAMEF22A3QJZ6 481 aa23.5■■□□□ 1.35
CLN3-239ENST00000628023 MBIPQ9NS73 344 aa23.5■■□□□ 1.35
CLN3-239ENST00000628023 ZBTB1Q9Y2K1 713 aa23.5■■□□□ 1.35
CLN3-239ENST00000628023 ATP10DQ9P241 1426 aa23.5■■□□□ 1.35
CLN3-239ENST00000628023 MYH14Q7Z406 1995 aaKnown RBP23.49■■□□□ 1.35
CLN3-239ENST00000628023 CANXP27824 592 aaKnown RBP23.49■■□□□ 1.35
CLN3-239ENST00000628023 INTS5Q6P9B9 1019 aaKnown RBP23.49■■□□□ 1.35
CLN3-239ENST00000628023 GPBP1L1Q9HC44 474 aaPredicted RBP23.49■■□□□ 1.35
CLN3-239ENST00000628023 USP16Q9Y5T5 823 aa23.48■■□□□ 1.35
CLN3-239ENST00000628023 LAMB4A4D0S4 1761 aa23.47■■□□□ 1.35
CLN3-239ENST00000628023 A0A0G2JLW4 131 aa23.47■■□□□ 1.35
CLN3-239ENST00000628023 ZNF853P0CG23 659 aa23.47■■□□□ 1.35
CLN3-239ENST00000628023 WDR63Q8IWG1 891 aa23.47■■□□□ 1.35
CLN3-239ENST00000628023 ZNF330Q9Y3S2 320 aaPredicted RBP23.47■■□□□ 1.35
CLN3-239ENST00000628023 IL16Q14005 1332 aa23.47■■□□□ 1.35
CLN3-239ENST00000628023 NPM2Q86SE8 214 aaKnown RBP23.46■■□□□ 1.35
CLN3-239ENST00000628023 BCS1LQ9Y276 419 aa23.46■■□□□ 1.35
CLN3-239ENST00000628023 KIF13BQ9NQT8 1826 aa23.45■■□□□ 1.34
CLN3-239ENST00000628023 PXDNLA1KZ92 1463 aa23.45■■□□□ 1.34
CLN3-239ENST00000628023 C10orf71Q711Q0 1435 aa23.45■■□□□ 1.34
CLN3-239ENST00000628023 SOS1Q07889 1333 aaPredicted RBP23.45■■□□□ 1.34
CLN3-239ENST00000628023 USP42Q9H9J4 1324 aaKnown RBP23.45■■□□□ 1.34
CLN3-239ENST00000628023 ZPR1O75312 459 aa23.45■■□□□ 1.34
CLN3-239ENST00000628023 A1BGP04217 495 aa23.45■■□□□ 1.34
CLN3-239ENST00000628023 TSR2Q969E8 191 aaKnown RBP23.44■■□□□ 1.34
CLN3-239ENST00000628023 SRP68Q9UHB9 627 aaKnown RBP23.44■■□□□ 1.34
CLN3-239ENST00000628023 C4AP0C0L4 1744 aa23.44■■□□□ 1.34
CLN3-239ENST00000628023 COL15A1P39059 1388 aa23.43■■□□□ 1.34
CLN3-239ENST00000628023 KRT24Q2M2I5 525 aa23.43■■□□□ 1.34
CLN3-239ENST00000628023 ZNF526Q8TF50 670 aaPredicted RBP23.43■■□□□ 1.34
CLN3-239ENST00000628023 ADCY9O60503 1353 aa23.42■■□□□ 1.34
CLN3-239ENST00000628023 DPEP1P16444 411 aa23.42■■□□□ 1.34
CLN3-239ENST00000628023 EIF2S2P20042 333 aaKnown RBP23.42■■□□□ 1.34
CLN3-239ENST00000628023 PIP4K2AP48426 406 aaPredicted RBP23.42■■□□□ 1.34
CLN3-239ENST00000628023 IL6STP40189 918 aaPredicted RBP23.41■■□□□ 1.34
CLN3-239ENST00000628023 FKBP8Q14318 412 aa23.41■■□□□ 1.34
CLN3-239ENST00000628023 N4BP2Q86UW6 1770 aaPredicted RBP23.4■■□□□ 1.34
CLN3-239ENST00000628023 DUSP27Q5VZP5 1158 aa23.4■■□□□ 1.34
CLN3-239ENST00000628023 ARHGAP27Q6ZUM4 889 aa23.4■■□□□ 1.34
CLN3-239ENST00000628023 MYH16Q9H6N6 1097 aa23.4■■□□□ 1.34
CLN3-239ENST00000628023 FANCIQ9NVI1 1328 aa23.39■■□□□ 1.34
CLN3-239ENST00000628023 A0A087WZG4 1122 aa23.39■■□□□ 1.33
CLN3-239ENST00000628023 HOXB7P09629 217 aa23.39■■□□□ 1.33
CLN3-239ENST00000628023 NECTIN2Q92692 538 aa23.39■■□□□ 1.33
CLN3-239ENST00000628023 PIM2Q9P1W9 311 aa23.39■■□□□ 1.33
CLN3-239ENST00000628023 ZNF521Q96K83 1311 aa23.38■■□□□ 1.33
CLN3-239ENST00000628023 EIF5P55010 431 aaKnown RBP23.38■■□□□ 1.33
CLN3-239ENST00000628023 HDGFL1Q5TGJ6 251 aa23.38■■□□□ 1.33
CLN3-239ENST00000628023 USPL1Q5W0Q7 1092 aa23.38■■□□□ 1.33
CLN3-239ENST00000628023 ELL2O00472 640 aaPredicted RBP23.37■■□□□ 1.33
CLN3-239ENST00000628023 HNRNPUQ00839 825 aaKnown RBP eCLIP23.37■■□□□ 1.33
CLN3-239ENST00000628023 GOLGA2Q08379 1002 aa23.37■■□□□ 1.33
CLN3-239ENST00000628023 ERBB4Q15303 1308 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms