RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 HEG1Q9ULI3 1381 aa16.69■□□□□ 0.26
PNKP-217ENST00000625216 YBX3P16989 372 aaKnown RBP eCLIP16.69■□□□□ 0.26
PNKP-217ENST00000625216 SRP68Q9UHB9 627 aaKnown RBP16.69■□□□□ 0.26
PNKP-217ENST00000625216 ZBTB1Q9Y2K1 713 aa16.69■□□□□ 0.26
PNKP-217ENST00000625216 GOLGB1Q14789 3259 aaKnown RBP16.68■□□□□ 0.26
PNKP-217ENST00000625216 MYH14Q7Z406 1995 aaKnown RBP16.68■□□□□ 0.26
PNKP-217ENST00000625216 A0A087WZG4 1122 aa16.68■□□□□ 0.26
PNKP-217ENST00000625216 FKBP8Q14318 412 aa16.68■□□□□ 0.26
PNKP-217ENST00000625216 PLEKHF1Q96S99 279 aa16.68■□□□□ 0.26
PNKP-217ENST00000625216 NARFQ9UHQ1 456 aa16.68■□□□□ 0.26
PNKP-217ENST00000625216 TM4SF1P30408 202 aa16.67■□□□□ 0.26
PNKP-217ENST00000625216 MCM10Q7L590 875 aa16.67■□□□□ 0.26
PNKP-217ENST00000625216 PNISRQ8TF01 805 aaKnown RBP16.67■□□□□ 0.26
PNKP-217ENST00000625216 TJP1Q07157 1748 aa16.67■□□□□ 0.26
PNKP-217ENST00000625216 CANXP27824 592 aaKnown RBP16.66■□□□□ 0.26
PNKP-217ENST00000625216 EIF5P55010 431 aaKnown RBP16.66■□□□□ 0.26
PNKP-217ENST00000625216 TAF7Q15545 349 aaPredicted RBP16.66■□□□□ 0.26
PNKP-217ENST00000625216 USPL1Q5W0Q7 1092 aa16.66■□□□□ 0.26
PNKP-217ENST00000625216 FAM9BQ8IZU0 186 aa16.66■□□□□ 0.26
PNKP-217ENST00000625216 COL15A1P39059 1388 aa16.65■□□□□ 0.26
PNKP-217ENST00000625216 IL6STP40189 918 aaPredicted RBP16.65■□□□□ 0.26
PNKP-217ENST00000625216 ZNF784Q8NCA9 323 aaPredicted RBP16.65■□□□□ 0.26
PNKP-217ENST00000625216 KCNQ3O43525 872 aa16.64■□□□□ 0.25
PNKP-217ENST00000625216 SNRPA1P09661 255 aaKnown RBP16.64■□□□□ 0.25
PNKP-217ENST00000625216 DCTN1Q14203 1278 aa16.64■□□□□ 0.25
PNKP-217ENST00000625216 NFE2L2Q16236 605 aa16.64■□□□□ 0.25
PNKP-217ENST00000625216 NPM2Q86SE8 214 aaKnown RBP16.64■□□□□ 0.25
PNKP-217ENST00000625216 MAPK8IP3Q9UPT6 1336 aa16.64■□□□□ 0.25
PNKP-217ENST00000625216 C10orf71Q711Q0 1435 aa16.63■□□□□ 0.25
PNKP-217ENST00000625216 POLRMTO00411 1230 aaKnown RBP16.63■□□□□ 0.25
PNKP-217ENST00000625216 DDR1Q08345 913 aa16.63■□□□□ 0.25
PNKP-217ENST00000625216 A0A0G2JLW4 131 aa16.62■□□□□ 0.25
PNKP-217ENST00000625216 UBR2Q8IWV8 1755 aa16.61■□□□□ 0.25
PNKP-217ENST00000625216 A1BGP04217 495 aa16.61■□□□□ 0.25
PNKP-217ENST00000625216 NFIXQ14938 502 aa16.61■□□□□ 0.25
PNKP-217ENST00000625216 BCL2L12Q9HB09 334 aa16.61■□□□□ 0.25
PNKP-217ENST00000625216 USP16Q9Y5T5 823 aa16.61■□□□□ 0.25
PNKP-217ENST00000625216 PXDNLA1KZ92 1463 aa16.61■□□□□ 0.25
PNKP-217ENST00000625216 C4AP0C0L4 1744 aa16.6■□□□□ 0.25
PNKP-217ENST00000625216 DPEP1P16444 411 aa16.6■□□□□ 0.25
PNKP-217ENST00000625216 SIPA1L3O60292 1781 aaPredicted RBP16.59■□□□□ 0.25
PNKP-217ENST00000625216 VIRMAQ69YN4 1812 aaKnown RBP16.59■□□□□ 0.25
PNKP-217ENST00000625216 PIM2Q9P1W9 311 aa16.59■□□□□ 0.25
PNKP-217ENST00000625216 CHD4Q14839 1912 aa16.58■□□□□ 0.25
PNKP-217ENST00000625216 SERPINB2P05120 415 aa16.58■□□□□ 0.24
PNKP-217ENST00000625216 KCNA3P22001 575 aa16.58■□□□□ 0.24
PNKP-217ENST00000625216 WWC3Q9ULE0 1092 aa16.58■□□□□ 0.24
PNKP-217ENST00000625216 TBC1D2BQ9UPU7 963 aa16.58■□□□□ 0.24
PNKP-217ENST00000625216 BCS1LQ9Y276 419 aa16.58■□□□□ 0.24
PNKP-217ENST00000625216 ZNF330Q9Y3S2 320 aaPredicted RBP16.58■□□□□ 0.24
PNKP-217ENST00000625216 RIPK4P57078 832 aa16.57■□□□□ 0.24
PNKP-217ENST00000625216 LMOD3Q0VAK6 560 aa16.57■□□□□ 0.24
PNKP-217ENST00000625216 MIS18AQ9NYP9 233 aa16.57■□□□□ 0.24
PNKP-217ENST00000625216 RGL2O15211 777 aa16.56■□□□□ 0.24
PNKP-217ENST00000625216 WDR43Q15061 677 aaKnown RBP eCLIP16.56■□□□□ 0.24
PNKP-217ENST00000625216 DZIP3Q86Y13 1208 aaKnown RBP16.56■□□□□ 0.24
PNKP-217ENST00000625216 BABAM1Q9NWV8 329 aa16.56■□□□□ 0.24
PNKP-217ENST00000625216 KIF13BQ9NQT8 1826 aa16.55■□□□□ 0.24
PNKP-217ENST00000625216 PRAMEF22A3QJZ6 481 aa16.55■□□□□ 0.24
PNKP-217ENST00000625216 CAMTA2O94983 1202 aa16.55■□□□□ 0.24
PNKP-217ENST00000625216 TMPOP42166 694 aaKnown RBP16.55■□□□□ 0.24
PNKP-217ENST00000625216 EIF4A1P60842 406 aaKnown RBP16.55■□□□□ 0.24
PNKP-217ENST00000625216 HNRNPUQ00839 825 aaKnown RBP eCLIP16.55■□□□□ 0.24
PNKP-217ENST00000625216 DALRD3Q5D0E6 543 aaKnown RBP16.55■□□□□ 0.24
PNKP-217ENST00000625216 CLEC4GQ6UXB4 293 aa16.55■□□□□ 0.24
PNKP-217ENST00000625216 GIGYF1O75420 1035 aaPredicted RBP16.54■□□□□ 0.24
PNKP-217ENST00000625216 TBC1D9BQ66K14 1250 aa16.54■□□□□ 0.24
PNKP-217ENST00000625216 BICDL1Q6ZP65 573 aa16.54■□□□□ 0.24
PNKP-217ENST00000625216 SETDB2Q96T68 719 aa16.54■□□□□ 0.24
PNKP-217ENST00000625216 ADAMTS8Q9UP79 889 aa16.54■□□□□ 0.24
PNKP-217ENST00000625216 PDZRN3Q9UPQ7 1066 aa16.54■□□□□ 0.24
PNKP-217ENST00000625216 ARHGAP27Q6ZUM4 889 aa16.53■□□□□ 0.24
PNKP-217ENST00000625216 RUNDC1Q96C34 613 aa16.53■□□□□ 0.24
PNKP-217ENST00000625216 THUMPD2Q9BTF0 503 aaKnown RBP16.53■□□□□ 0.24
PNKP-217ENST00000625216 ZNF652Q9Y2D9 606 aa16.53■□□□□ 0.24
PNKP-217ENST00000625216 NBPF26B4DH59 902 aa16.52■□□□□ 0.24
PNKP-217ENST00000625216 CHRNA5P30532 468 aa16.52■□□□□ 0.24
PNKP-217ENST00000625216 NBPF10Q6P3W6 841 aaKnown RBP16.52■□□□□ 0.24
PNKP-217ENST00000625216 NBPF15Q8N660 670 aa16.52■□□□□ 0.24
PNKP-217ENST00000625216 CARMIL3Q8ND23 1372 aa16.51■□□□□ 0.23
PNKP-217ENST00000625216 H0YIN7 160 aa16.51■□□□□ 0.23
PNKP-217ENST00000625216 PIP4K2AP48426 406 aaPredicted RBP16.51■□□□□ 0.23
PNKP-217ENST00000625216 BRIP1Q9BX63 1249 aa16.51■□□□□ 0.23
PNKP-217ENST00000625216 TSPYL4Q9UJ04 414 aa16.51■□□□□ 0.23
PNKP-217ENST00000625216 PDE6BP35913 854 aa16.5■□□□□ 0.23
PNKP-217ENST00000625216 ADCY9O60503 1353 aa16.5■□□□□ 0.23
PNKP-217ENST00000625216 SENP3-EIF4A1A0A087X0R7 540 aa16.49■□□□□ 0.23
PNKP-217ENST00000625216 PRR5LQ6MZQ0 368 aa16.49■□□□□ 0.23
PNKP-217ENST00000625216 C2CD5Q86YS7 1000 aa16.49■□□□□ 0.23
PNKP-217ENST00000625216 CCDC146Q8IYE0 955 aa16.49■□□□□ 0.23
PNKP-217ENST00000625216 TTLL6Q8N841 843 aa16.49■□□□□ 0.23
PNKP-217ENST00000625216 KIAA1551Q9HCM1 1747 aa16.49■□□□□ 0.23
PNKP-217ENST00000625216 ATP10DQ9P241 1426 aa16.49■□□□□ 0.23
PNKP-217ENST00000625216 ERBB4Q15303 1308 aa16.48■□□□□ 0.23
PNKP-217ENST00000625216 ZBED9Q6R2W3 1325 aa16.48■□□□□ 0.23
PNKP-217ENST00000625216 NPHP1O15259 732 aa16.48■□□□□ 0.23
PNKP-217ENST00000625216 CNBD1Q8NA66 436 aa16.48■□□□□ 0.23
PNKP-217ENST00000625216 GPBP1L1Q9HC44 474 aaPredicted RBP16.48■□□□□ 0.23
PNKP-217ENST00000625216 N4BP2Q86UW6 1770 aaPredicted RBP16.47■□□□□ 0.23
PNKP-217ENST00000625216 ERVV-1B6SEH8 477 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms