RNA–Protein interactions for RNA: ENST00000618856.1

NEK3-209, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-209ENST00000618856 C4AP0C0L4 1744 aa10.89□□□□□ -0.67
NEK3-209ENST00000618856 SOS1Q07889 1333 aaPredicted RBP10.88□□□□□ -0.67
NEK3-209ENST00000618856 LMOD3Q0VAK6 560 aa10.88□□□□□ -0.67
NEK3-209ENST00000618856 TRAPPC3LQ5T215 181 aa10.88□□□□□ -0.67
NEK3-209ENST00000618856 CNKSR2Q8WXI2 1034 aa10.88□□□□□ -0.67
NEK3-209ENST00000618856 THUMPD2Q9BTF0 503 aaKnown RBP10.88□□□□□ -0.67
NEK3-209ENST00000618856 CCDC87Q9NVE4 849 aa10.88□□□□□ -0.67
NEK3-209ENST00000618856 STARD3NLO95772 234 aa10.87□□□□□ -0.67
NEK3-209ENST00000618856 EIF5P55010 431 aaKnown RBP10.87□□□□□ -0.67
NEK3-209ENST00000618856 RNF216Q9NWF9 866 aaPredicted RBP10.87□□□□□ -0.67
NEK3-209ENST00000618856 ZBTB1Q9Y2K1 713 aa10.87□□□□□ -0.67
NEK3-209ENST00000618856 CHL1O00533 1208 aa10.86□□□□□ -0.67
NEK3-209ENST00000618856 APAF1O14727 1248 aa10.86□□□□□ -0.67
NEK3-209ENST00000618856 SNRPA1P09661 255 aaKnown RBP10.86□□□□□ -0.67
NEK3-209ENST00000618856 ZNF853P0CG23 659 aa10.86□□□□□ -0.67
NEK3-209ENST00000618856 GYS1P13807 737 aa10.86□□□□□ -0.67
NEK3-209ENST00000618856 EIF4A1P60842 406 aaKnown RBP10.86□□□□□ -0.67
NEK3-209ENST00000618856 CCDC27Q2M243 656 aa10.86□□□□□ -0.67
NEK3-209ENST00000618856 ARXQ96QS3 562 aa10.86□□□□□ -0.67
NEK3-209ENST00000618856 MRS2Q9HD23 443 aa10.86□□□□□ -0.67
NEK3-209ENST00000618856 MIS18AQ9NYP9 233 aa10.86□□□□□ -0.67
NEK3-209ENST00000618856 RRP7AQ9Y3A4 280 aaKnown RBP10.86□□□□□ -0.67
NEK3-209ENST00000618856 USP42Q9H9J4 1324 aaKnown RBP10.85□□□□□ -0.67
NEK3-209ENST00000618856 LAMB4A4D0S4 1761 aa10.85□□□□□ -0.67
NEK3-209ENST00000618856 PRAMEF22A3QJZ6 481 aa10.85□□□□□ -0.67
NEK3-209ENST00000618856 GIGYF1O75420 1035 aaPredicted RBP10.85□□□□□ -0.67
NEK3-209ENST00000618856 PHF14O94880 888 aa10.85□□□□□ -0.67
NEK3-209ENST00000618856 IL6STP40189 918 aaPredicted RBP10.85□□□□□ -0.67
NEK3-209ENST00000618856 USP16Q9Y5T5 823 aa10.85□□□□□ -0.67
NEK3-209ENST00000618856 UTRNP46939 3433 aa10.85□□□□□ -0.67
NEK3-209ENST00000618856 POLD1P28340 1107 aa10.84□□□□□ -0.67
NEK3-209ENST00000618856 NLGN1Q8N2Q7 840 aa10.84□□□□□ -0.67
NEK3-209ENST00000618856 NARFQ9UHQ1 456 aa10.84□□□□□ -0.67
NEK3-209ENST00000618856 COL15A1P39059 1388 aa10.84□□□□□ -0.67
NEK3-209ENST00000618856 A1BGP04217 495 aa10.83□□□□□ -0.68
NEK3-209ENST00000618856 RFC4P35249 363 aa10.83□□□□□ -0.68
NEK3-209ENST00000618856 CFAP44Q96MT7 982 aa10.83□□□□□ -0.68
NEK3-209ENST00000618856 SYT17Q9BSW7 474 aa10.83□□□□□ -0.68
NEK3-209ENST00000618856 FHDC1Q9C0D6 1143 aaPredicted RBP10.83□□□□□ -0.68
NEK3-209ENST00000618856 BCL2L12Q9HB09 334 aa10.83□□□□□ -0.68
NEK3-209ENST00000618856 GOLGB1Q14789 3259 aaKnown RBP10.83□□□□□ -0.68
NEK3-209ENST00000618856 KIF13BQ9NQT8 1826 aa10.82□□□□□ -0.68
NEK3-209ENST00000618856 NBPF26B4DH59 902 aa10.82□□□□□ -0.68
NEK3-209ENST00000618856 RGL2O15211 777 aa10.82□□□□□ -0.68
NEK3-209ENST00000618856 TM4SF1P30408 202 aa10.82□□□□□ -0.68
NEK3-209ENST00000618856 NEUROD2Q15784 382 aa10.82□□□□□ -0.68
NEK3-209ENST00000618856 MSL1Q68DK7 614 aa10.82□□□□□ -0.68
NEK3-209ENST00000618856 NBPF10Q6P3W6 841 aaKnown RBP10.82□□□□□ -0.68
NEK3-209ENST00000618856 NBPF15Q8N660 670 aa10.82□□□□□ -0.68
NEK3-209ENST00000618856 PPP1R1BQ9UD71 204 aaPredicted RBP10.82□□□□□ -0.68
NEK3-209ENST00000618856 SRP68Q9UHB9 627 aaKnown RBP10.82□□□□□ -0.68
NEK3-209ENST00000618856 TSPYL4Q9UJ04 414 aa10.82□□□□□ -0.68
NEK3-209ENST00000618856 SCN7AQ01118 1682 aa10.82□□□□□ -0.68
NEK3-209ENST00000618856 A0A087WZG4 1122 aa10.81□□□□□ -0.68
NEK3-209ENST00000618856 CCER2I3L3R5 266 aa10.81□□□□□ -0.68
NEK3-209ENST00000618856 CANXP27824 592 aaKnown RBP10.81□□□□□ -0.68
NEK3-209ENST00000618856 FKBP8Q14318 412 aa10.81□□□□□ -0.68
NEK3-209ENST00000618856 LRP10Q7Z4F1 713 aa10.81□□□□□ -0.68
NEK3-209ENST00000618856 IFT57Q9NWB7 429 aa10.81□□□□□ -0.68
NEK3-209ENST00000618856 CD2APQ9Y5K6 639 aa10.81□□□□□ -0.68
NEK3-209ENST00000618856 ERBB4Q15303 1308 aa10.81□□□□□ -0.68
NEK3-209ENST00000618856 NRXN2Q9P2S2 1712 aa10.81□□□□□ -0.68
NEK3-209ENST00000618856 BCORQ6W2J9 1755 aa10.8□□□□□ -0.68
NEK3-209ENST00000618856 MMP10P09238 476 aa10.8□□□□□ -0.68
NEK3-209ENST00000618856 CALD1Q05682 793 aaKnown RBP10.8□□□□□ -0.68
NEK3-209ENST00000618856 PDIA6Q15084 440 aa10.8□□□□□ -0.68
NEK3-209ENST00000618856 USPL1Q5W0Q7 1092 aa10.8□□□□□ -0.68
NEK3-209ENST00000618856 WWC1Q8IX03 1113 aa10.8□□□□□ -0.68
NEK3-209ENST00000618856 NGEFQ8N5V2 710 aa10.8□□□□□ -0.68
NEK3-209ENST00000618856 KIAA1551Q9HCM1 1747 aa10.8□□□□□ -0.68
NEK3-209ENST00000618856 IL16Q14005 1332 aa10.8□□□□□ -0.68
NEK3-209ENST00000618856 C10orf71Q711Q0 1435 aa10.79□□□□□ -0.68
NEK3-209ENST00000618856 CAMTA2O94983 1202 aa10.79□□□□□ -0.68
NEK3-209ENST00000618856 HOXB7P09629 217 aa10.79□□□□□ -0.68
NEK3-209ENST00000618856 DDR1Q08345 913 aa10.79□□□□□ -0.68
NEK3-209ENST00000618856 MBIPQ9NS73 344 aa10.79□□□□□ -0.68
NEK3-209ENST00000618856 POLRMTO00411 1230 aaKnown RBP10.78□□□□□ -0.68
NEK3-209ENST00000618856 ZPR1O75312 459 aa10.78□□□□□ -0.68
NEK3-209ENST00000618856 GNAI1P63096 354 aa10.78□□□□□ -0.68
NEK3-209ENST00000618856 ZNF521Q96K83 1311 aa10.78□□□□□ -0.68
NEK3-209ENST00000618856 C1QBPQ07021 282 aaKnown RBP10.77□□□□□ -0.69
NEK3-209ENST00000618856 NFIXQ14938 502 aa10.77□□□□□ -0.69
NEK3-209ENST00000618856 KRT24Q2M2I5 525 aa10.77□□□□□ -0.69
NEK3-209ENST00000618856 CLEC4GQ6UXB4 293 aa10.77□□□□□ -0.69
NEK3-209ENST00000618856 WDR63Q8IWG1 891 aa10.77□□□□□ -0.69
NEK3-209ENST00000618856 NLGN2Q8NFZ4 835 aa10.77□□□□□ -0.69
NEK3-209ENST00000618856 PIP4K2AP48426 406 aaPredicted RBP10.76□□□□□ -0.69
NEK3-209ENST00000618856 DZIP3Q86Y13 1208 aaKnown RBP10.76□□□□□ -0.69
NEK3-209ENST00000618856 TBC1D2BQ9UPU7 963 aa10.76□□□□□ -0.69
NEK3-209ENST00000618856 PXDNLA1KZ92 1463 aa10.75□□□□□ -0.69
NEK3-209ENST00000618856 AFDNP55196 1824 aaKnown RBP10.75□□□□□ -0.69
NEK3-209ENST00000618856 ERVV-1B6SEH8 477 aa10.75□□□□□ -0.69
NEK3-209ENST00000618856 TGFB2P61812 414 aa10.75□□□□□ -0.69
NEK3-209ENST00000618856 TBC1D9BQ66K14 1250 aa10.75□□□□□ -0.69
NEK3-209ENST00000618856 FAM9BQ8IZU0 186 aa10.75□□□□□ -0.69
NEK3-209ENST00000618856 PARP3Q9Y6F1 533 aa10.75□□□□□ -0.69
NEK3-209ENST00000618856 KCNA4P22459 653 aa10.74□□□□□ -0.69
NEK3-209ENST00000618856 DIEXFQ68CQ4 756 aaKnown RBP10.74□□□□□ -0.69
NEK3-209ENST00000618856 DDX21Q9NR30 783 aaKnown RBP eCLIP10.74□□□□□ -0.69
NEK3-209ENST00000618856 LAS1LQ9Y4W2 734 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms