RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 CANXP27824 592 aaKnown RBP14.97□□□□□ -0.01
PDPN-211ENST00000617617 MVPQ14764 893 aaKnown RBP14.97□□□□□ -0.01
PDPN-211ENST00000617617 CRBNQ96SW2 442 aa14.97□□□□□ -0.01
PDPN-211ENST00000617617 DDX21Q9NR30 783 aaKnown RBP eCLIP14.97□□□□□ -0.01
PDPN-211ENST00000617617 HYPKQ9NX55 129 aa14.97□□□□□ -0.01
PDPN-211ENST00000617617 ATP10DQ9P241 1426 aa14.97□□□□□ -0.01
PDPN-211ENST00000617617 ANKRD36CQ5JPF3 1778 aa14.96□□□□□ -0.01
PDPN-211ENST00000617617 PDIA6Q15084 440 aa14.96□□□□□ -0.01
PDPN-211ENST00000617617 INTS3Q68E01 1043 aaKnown RBP14.96□□□□□ -0.01
PDPN-211ENST00000617617 SEPT12Q8IYM1 358 aa14.96□□□□□ -0.01
PDPN-211ENST00000617617 KAT6BQ8WYB5 2073 aa14.96□□□□□ -0.01
PDPN-211ENST00000617617 FRAT1Q92837 279 aaPredicted RBP14.96□□□□□ -0.02
PDPN-211ENST00000617617 RLBP1P12271 317 aa14.95□□□□□ -0.02
PDPN-211ENST00000617617 LRP10Q7Z4F1 713 aa14.95□□□□□ -0.02
PDPN-211ENST00000617617 SMARCC1Q92922 1105 aaPredicted RBP14.95□□□□□ -0.02
PDPN-211ENST00000617617 CHMP4BQ9H444 224 aaKnown RBP14.95□□□□□ -0.02
PDPN-211ENST00000617617 PRIM1P49642 420 aaKnown RBP14.95□□□□□ -0.02
PDPN-211ENST00000617617 AFDNP55196 1824 aaKnown RBP14.95□□□□□ -0.02
PDPN-211ENST00000617617 TNS1Q9HBL0 1735 aaKnown RBP14.94□□□□□ -0.02
PDPN-211ENST00000617617 EXOC6Q8TAG9 804 aa14.94□□□□□ -0.02
PDPN-211ENST00000617617 FLIIQ13045 1269 aa14.94□□□□□ -0.02
PDPN-211ENST00000617617 DDX19BQ9UMR2 479 aa14.94□□□□□ -0.02
PDPN-211ENST00000617617 BCORQ6W2J9 1755 aa14.94□□□□□ -0.02
PDPN-211ENST00000617617 CHPF2Q9P2E5 772 aa14.93□□□□□ -0.02
PDPN-211ENST00000617617 ASAP1Q9ULH1 1129 aa14.93□□□□□ -0.02
PDPN-211ENST00000617617 IRX6P78412 446 aaPredicted RBP14.93□□□□□ -0.02
PDPN-211ENST00000617617 FTSJ3Q8IY81 847 aaKnown RBP14.93□□□□□ -0.02
PDPN-211ENST00000617617 PANK1Q8TE04 598 aa14.93□□□□□ -0.02
PDPN-211ENST00000617617 MYH14Q7Z406 1995 aaKnown RBP14.92□□□□□ -0.02
PDPN-211ENST00000617617 G2E3Q7L622 706 aa14.92□□□□□ -0.02
PDPN-211ENST00000617617 PRAMEF22A3QJZ6 481 aa14.92□□□□□ -0.02
PDPN-211ENST00000617617 CCT4P50991 539 aaKnown RBP14.91□□□□□ -0.02
PDPN-211ENST00000617617 RGS17Q9UGC6 210 aaPredicted RBP14.91□□□□□ -0.02
PDPN-211ENST00000617617 TNNQ9UQP3 1299 aa14.91□□□□□ -0.02
PDPN-211ENST00000617617 TMEM57Q8N5G2 664 aa14.91□□□□□ -0.02
PDPN-211ENST00000617617 USP16Q9Y5T5 823 aa14.91□□□□□ -0.02
PDPN-211ENST00000617617 ADCY9O60503 1353 aa14.9□□□□□ -0.02
PDPN-211ENST00000617617 PALLDQ8WX93 1383 aa14.9□□□□□ -0.02
PDPN-211ENST00000617617 NUP98P52948 1817 aa14.9□□□□□ -0.02
PDPN-211ENST00000617617 EIF2S2P20042 333 aaKnown RBP14.9□□□□□ -0.02
PDPN-211ENST00000617617 FAM196AQ6ZSG2 479 aa14.9□□□□□ -0.02
PDPN-211ENST00000617617 KRT27Q7Z3Y8 459 aa14.89□□□□□ -0.03
PDPN-211ENST00000617617 COG6Q9Y2V7 657 aa14.89□□□□□ -0.03
PDPN-211ENST00000617617 SLC4A9Q96Q91 983 aa14.89□□□□□ -0.03
PDPN-211ENST00000617617 BCL11BQ9C0K0 894 aaPredicted RBP14.89□□□□□ -0.03
PDPN-211ENST00000617617 ZBTB40Q9NUA8 1239 aa14.89□□□□□ -0.03
PDPN-211ENST00000617617 TCERG1O14776 1098 aaKnown RBP14.88□□□□□ -0.03
PDPN-211ENST00000617617 ZBTB7BO15156 539 aaPredicted RBP14.88□□□□□ -0.03
PDPN-211ENST00000617617 RXRBP28702 533 aa14.88□□□□□ -0.03
PDPN-211ENST00000617617 CLUAP1Q96AJ1 413 aa14.88□□□□□ -0.03
PDPN-211ENST00000617617 SCN7AQ01118 1682 aa14.88□□□□□ -0.03
PDPN-211ENST00000617617 STARD3NLO95772 234 aa14.88□□□□□ -0.03
PDPN-211ENST00000617617 CYP19A1P11511 503 aaPredicted RBP14.88□□□□□ -0.03
PDPN-211ENST00000617617 PROSER3Q2NL68 480 aa14.88□□□□□ -0.03
PDPN-211ENST00000617617 KSR2Q6VAB6 950 aa14.88□□□□□ -0.03
PDPN-211ENST00000617617 PHAXQ9H814 394 aaKnown RBP14.88□□□□□ -0.03
PDPN-211ENST00000617617 C4BP0C0L5 1744 aa14.87□□□□□ -0.03
PDPN-211ENST00000617617 NBPF26B4DH59 902 aa14.87□□□□□ -0.03
PDPN-211ENST00000617617 DDX58O95786 925 aaKnown RBP14.87□□□□□ -0.03
PDPN-211ENST00000617617 NBPF14Q5TI25 921 aa14.87□□□□□ -0.03
PDPN-211ENST00000617617 NBPF10Q6P3W6 841 aaKnown RBP14.87□□□□□ -0.03
PDPN-211ENST00000617617 NBPF15Q8N660 670 aa14.87□□□□□ -0.03
PDPN-211ENST00000617617 FKBP5Q13451 457 aaPredicted RBP14.87□□□□□ -0.03
PDPN-211ENST00000617617 ACSBG1Q96GR2 724 aa14.87□□□□□ -0.03
PDPN-211ENST00000617617 LOC102724428A0A0B4J2F2 783 aa14.86□□□□□ -0.03
PDPN-211ENST00000617617 RGL2O15211 777 aa14.86□□□□□ -0.03
PDPN-211ENST00000617617 HMGB2P26583 209 aaKnown RBP14.86□□□□□ -0.03
PDPN-211ENST00000617617 SIK1P57059 783 aa14.86□□□□□ -0.03
PDPN-211ENST00000617617 UBR3Q6ZT12 1888 aa14.86□□□□□ -0.03
PDPN-211ENST00000617617 QSER1Q2KHR3 1735 aa14.86□□□□□ -0.03
PDPN-211ENST00000617617 KCNQ2O43526 872 aa14.86□□□□□ -0.03
PDPN-211ENST00000617617 PTCD1O75127 700 aaKnown RBP14.85□□□□□ -0.03
PDPN-211ENST00000617617 ITPRIPQ8IWB1 547 aa14.85□□□□□ -0.03
PDPN-211ENST00000617617 DNAJC10Q8IXB1 793 aa14.85□□□□□ -0.03
PDPN-211ENST00000617617 DNAAF4Q8WXU2 420 aa14.85□□□□□ -0.03
PDPN-211ENST00000617617 A0A0G2JS52 829 aa14.85□□□□□ -0.03
PDPN-211ENST00000617617 ALDH1L1O75891 902 aa14.85□□□□□ -0.03
PDPN-211ENST00000617617 MYT1Q01538 1121 aa14.85□□□□□ -0.03
PDPN-211ENST00000617617 NECTIN2Q92692 538 aa14.85□□□□□ -0.03
PDPN-211ENST00000617617 SYTL4Q96C24 671 aaPredicted RBP14.85□□□□□ -0.03
PDPN-211ENST00000617617 KDM2BQ8NHM5 1336 aa14.85□□□□□ -0.03
PDPN-211ENST00000617617 CNTNAP4Q9C0A0 1308 aa14.85□□□□□ -0.03
PDPN-211ENST00000617617 COL15A1P39059 1388 aa14.84□□□□□ -0.03
PDPN-211ENST00000617617 C4AP0C0L4 1744 aa14.84□□□□□ -0.03
PDPN-211ENST00000617617 BEND3Q5T5X7 828 aa14.84□□□□□ -0.03
PDPN-211ENST00000617617 RC3H1Q5TC82 1133 aaKnown RBP14.84□□□□□ -0.03
PDPN-211ENST00000617617 PLBD2Q8NHP8 589 aa14.84□□□□□ -0.03
PDPN-211ENST00000617617 LAMB2P55268 1798 aa14.84□□□□□ -0.03
PDPN-211ENST00000617617 UTYO14607 1347 aa14.84□□□□□ -0.03
PDPN-211ENST00000617617 IL6STP40189 918 aaPredicted RBP14.84□□□□□ -0.03
PDPN-211ENST00000617617 RBM42Q9BTD8 480 aaKnown RBP14.83□□□□□ -0.04
PDPN-211ENST00000617617 PI4KAP2A4QPH2 592 aa14.83□□□□□ -0.04
PDPN-211ENST00000617617 HDAC1Q13547 482 aaPredicted RBP14.83□□□□□ -0.04
PDPN-211ENST00000617617 PI4KAP1Q8N8J0 262 aa14.83□□□□□ -0.04
PDPN-211ENST00000617617 XAGE3Q8WTP9 111 aa14.83□□□□□ -0.04
PDPN-211ENST00000617617 POTEAQ6S8J7 498 aa14.82□□□□□ -0.04
PDPN-211ENST00000617617 METTL22Q9BUU2 404 aaPredicted RBP14.82□□□□□ -0.04
PDPN-211ENST00000617617 INTS5Q6P9B9 1019 aaKnown RBP14.82□□□□□ -0.04
PDPN-211ENST00000617617 COPS6Q7L5N1 327 aa14.82□□□□□ -0.04
PDPN-211ENST00000617617 CCDC136Q96JN2 1154 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms