RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 EVI5LQ96CN4 794 aa16.39■□□□□ 0.21
CPSF1-212ENST00000616140 TMX3Q96JJ7 454 aa16.39■□□□□ 0.21
CPSF1-212ENST00000616140 IGHMBP2P38935 993 aaKnown RBP16.38■□□□□ 0.21
CPSF1-212ENST00000616140 ARHGAP29Q52LW3 1261 aa16.38■□□□□ 0.21
CPSF1-212ENST00000616140 GJB2P29033 226 aa16.38■□□□□ 0.21
CPSF1-212ENST00000616140 MINDY4BA8MYZ0 360 aa16.38■□□□□ 0.21
CPSF1-212ENST00000616140 CEBPAP49715 358 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-212ENST00000616140 C8orf58Q8NAV2 365 aa16.38■□□□□ 0.21
CPSF1-212ENST00000616140 NAPBQ9H115 298 aa16.38■□□□□ 0.21
CPSF1-212ENST00000616140 HMGB1P09429 215 aaKnown RBP16.37■□□□□ 0.21
CPSF1-212ENST00000616140 MAP3K2Q9Y2U5 619 aa16.37■□□□□ 0.21
CPSF1-212ENST00000616140 ACEP12821 1306 aa16.37■□□□□ 0.21
CPSF1-212ENST00000616140 PPFIA3O75145 1194 aa16.37■□□□□ 0.21
CPSF1-212ENST00000616140 ERLIN1O75477 346 aa16.37■□□□□ 0.21
CPSF1-212ENST00000616140 KLHL10Q6JEL2 608 aa16.37■□□□□ 0.21
CPSF1-212ENST00000616140 LUC7LQ9NQ29 371 aaKnown RBP16.37■□□□□ 0.21
CPSF1-212ENST00000616140 BICDL1Q6ZP65 573 aa16.37■□□□□ 0.21
CPSF1-212ENST00000616140 EPB41L2O43491 1005 aaKnown RBP16.37■□□□□ 0.21
CPSF1-212ENST00000616140 IFIT5Q13325 482 aaKnown RBP16.37■□□□□ 0.21
CPSF1-212ENST00000616140 ANKRD44Q8N8A2 993 aa16.37■□□□□ 0.21
CPSF1-212ENST00000616140 RHPN1Q8TCX5 695 aa16.37■□□□□ 0.21
CPSF1-212ENST00000616140 NUTM2BA6NNL0 878 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-212ENST00000616140 NUTM2EB1AL46 878 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-212ENST00000616140 PDE1AP54750 535 aa16.36■□□□□ 0.21
CPSF1-212ENST00000616140 CCDC181Q5TID7 509 aa16.36■□□□□ 0.21
CPSF1-212ENST00000616140 UBE3BQ7Z3V4 1068 aa16.36■□□□□ 0.21
CPSF1-212ENST00000616140 NUTM2AQ8IVF1 878 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-212ENST00000616140 PRAG1Q86YV5 1406 aa16.36■□□□□ 0.21
CPSF1-212ENST00000616140 HCLS1P14317 486 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-212ENST00000616140 DDX19AQ9NUU7 478 aaKnown RBP16.36■□□□□ 0.21
CPSF1-212ENST00000616140 CLIP2Q9UDT6 1046 aa16.36■□□□□ 0.21
CPSF1-212ENST00000616140 KLHL34Q8N239 644 aa16.36■□□□□ 0.21
CPSF1-212ENST00000616140 PANK2Q9BZ23 570 aa16.36■□□□□ 0.21
CPSF1-212ENST00000616140 ATP5J2-PTCD1G3V325 749 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 XRCC6P12956 609 aaKnown RBP eCLIP16.35■□□□□ 0.212e-8■□□□□ 10.1
CPSF1-212ENST00000616140 ZNF165P49910 485 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 TSPYL1Q9H0U9 437 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 ZBTB3Q9H5J0 574 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 POGZQ7Z3K3 1410 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 ZNF213O14771 459 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 EIF5P55010 431 aaKnown RBP16.35■□□□□ 0.21
CPSF1-212ENST00000616140 FSIP1Q8NA03 581 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 KIF18AQ8NI77 898 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 C16orf45Q96MC5 204 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-212ENST00000616140 SNRKQ9NRH2 765 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 GOLIM4O00461 696 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 PER1O15534 1290 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-212ENST00000616140 C16orf71Q8IYS4 520 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-212ENST00000616140 ASXL1Q8IXJ9 1541 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 FANCAO15360 1455 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 ADCY5O95622 1261 aa16.35■□□□□ 0.21
CPSF1-212ENST00000616140 GOLGA8BA8MQT2 603 aa16.34■□□□□ 0.21
CPSF1-212ENST00000616140 TCEANC2Q96MN5 208 aa16.34■□□□□ 0.21
CPSF1-212ENST00000616140 KIF2AO00139 706 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-212ENST00000616140 BMP2KQ9NSY1 1161 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-212ENST00000616140 MYO6Q9UM54 1294 aa16.34■□□□□ 0.21
CPSF1-212ENST00000616140 SYCP1Q15431 976 aa16.34■□□□□ 0.21
CPSF1-212ENST00000616140 PHF23Q9BUL5 403 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-212ENST00000616140 TRMT1Q9NXH9 659 aaKnown RBP16.34■□□□□ 0.21
CPSF1-212ENST00000616140 TMOD3Q9NYL9 352 aa16.34■□□□□ 0.21
CPSF1-212ENST00000616140 PIK3R4Q99570 1358 aa16.34■□□□□ 0.21
CPSF1-212ENST00000616140 UBE2HP62256 183 aa16.33■□□□□ 0.21
CPSF1-212ENST00000616140 ZSCAN23Q3MJ62 389 aa16.33■□□□□ 0.21
CPSF1-212ENST00000616140 CEP131Q9UPN4 1083 aa16.33■□□□□ 0.21
CPSF1-212ENST00000616140 CCDC196A0A1B0GTZ2 297 aa16.33■□□□□ 0.2
CPSF1-212ENST00000616140 BIN1O00499 593 aa16.33■□□□□ 0.2
CPSF1-212ENST00000616140 EIF3JO75822 258 aaKnown RBP16.33■□□□□ 0.2
CPSF1-212ENST00000616140 SEC24BO95487 1268 aa16.33■□□□□ 0.2
CPSF1-212ENST00000616140 CARD14Q9BXL6 1004 aa16.33■□□□□ 0.2
CPSF1-212ENST00000616140 CTAGE5O15320 804 aa16.33■□□□□ 0.2
CPSF1-212ENST00000616140 UGGT2Q9NYU1 1516 aa16.33■□□□□ 0.2
CPSF1-212ENST00000616140 URI1O94763 535 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-212ENST00000616140 TSPYL6Q8N831 410 aa16.33■□□□□ 0.2
CPSF1-212ENST00000616140 JARID2Q92833 1246 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-212ENST00000616140 POLR3AO14802 1390 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-212ENST00000616140 TNNT1P13805 278 aa16.32■□□□□ 0.2
CPSF1-212ENST00000616140 NECAB1Q8N987 351 aa16.32■□□□□ 0.2
CPSF1-212ENST00000616140 BIVM-ERCC5R4GMW8 1640 aa16.32■□□□□ 0.2
CPSF1-212ENST00000616140 HAND2P61296 217 aa16.32■□□□□ 0.2
CPSF1-212ENST00000616140 MAP3K12Q12852 859 aa16.32■□□□□ 0.2
CPSF1-212ENST00000616140 GIMAP6Q6P9H5 292 aa16.32■□□□□ 0.2
CPSF1-212ENST00000616140 MRPL50Q8N5N7 158 aaKnown RBP16.32■□□□□ 0.2
CPSF1-212ENST00000616140 POLKQ9UBT6 870 aa16.32■□□□□ 0.2
CPSF1-212ENST00000616140 TOP1P11387 765 aaKnown RBP16.32■□□□□ 0.2
CPSF1-212ENST00000616140 NEK1Q96PY6 1258 aa16.31■□□□□ 0.2
CPSF1-212ENST00000616140 TRMT112Q9UI30 125 aaKnown RBP16.31■□□□□ 0.2
CPSF1-212ENST00000616140 PKNOX2Q96KN3 472 aa16.31■□□□□ 0.2
CPSF1-212ENST00000616140 USP16Q9Y5T5 823 aa16.31■□□□□ 0.2
CPSF1-212ENST00000616140 PEG3Q9GZU2 1588 aa16.31■□□□□ 0.2
CPSF1-212ENST00000616140 GPTP24298 496 aa16.31■□□□□ 0.2
CPSF1-212ENST00000616140 SMC5Q8IY18 1101 aa16.31■□□□□ 0.2
CPSF1-212ENST00000616140 IFIT3O14879 490 aaKnown RBP16.31■□□□□ 0.2
CPSF1-212ENST00000616140 TMCO3Q6UWJ1 677 aa16.31■□□□□ 0.2
CPSF1-212ENST00000616140 ESYT1Q9BSJ8 1104 aa16.31■□□□□ 0.2
CPSF1-212ENST00000616140 KDM5BQ9UGL1 1544 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 VAMP4O75379 141 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 USP5P45974 858 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 BRF1Q92994 677 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 SLC12A7Q9Y666 1083 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 RANBP6O60518 1105 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms