RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 GYS1P13807 737 aa7.56□□□□□ -1.2
CPNE3-208ENST00000614678 NBPF10Q6P3W6 841 aaKnown RBP7.56□□□□□ -1.2
CPNE3-208ENST00000614678 NBPF15Q8N660 670 aa7.56□□□□□ -1.2
CPNE3-208ENST00000614678 BCL2L12Q9HB09 334 aa7.56□□□□□ -1.2
CPNE3-208ENST00000614678 USPL1Q5W0Q7 1092 aa7.56□□□□□ -1.2
CPNE3-208ENST00000614678 BICDL1Q6ZP65 573 aa7.56□□□□□ -1.2
CPNE3-208ENST00000614678 FAM9BQ8IZU0 186 aa7.56□□□□□ -1.2
CPNE3-208ENST00000614678 MRS2Q9HD23 443 aa7.56□□□□□ -1.2
CPNE3-208ENST00000614678 RTF1Q92541 710 aaKnown RBP7.55□□□□□ -1.2
CPNE3-208ENST00000614678 MMP10P09238 476 aa7.55□□□□□ -1.2
CPNE3-208ENST00000614678 DDR1Q08345 913 aa7.55□□□□□ -1.2
CPNE3-208ENST00000614678 PROSER3Q2NL68 480 aa7.55□□□□□ -1.2
CPNE3-208ENST00000614678 PNISRQ8TF01 805 aaKnown RBP7.55□□□□□ -1.2
CPNE3-208ENST00000614678 RTCBQ9Y3I0 505 aaKnown RBP7.55□□□□□ -1.2
CPNE3-208ENST00000614678 ELL2O00472 640 aaPredicted RBP7.55□□□□□ -1.2
CPNE3-208ENST00000614678 WDR43Q15061 677 aaKnown RBP eCLIP7.55□□□□□ -1.2
CPNE3-208ENST00000614678 PELP1Q8IZL8 1130 aaKnown RBP7.55□□□□□ -1.2
CPNE3-208ENST00000614678 TTC5Q8N0Z6 440 aa7.55□□□□□ -1.2
CPNE3-208ENST00000614678 TRAPPC3LQ5T215 181 aa7.54□□□□□ -1.2
CPNE3-208ENST00000614678 MAPK8IP3Q9UPT6 1336 aa7.54□□□□□ -1.2
CPNE3-208ENST00000614678 HEG1Q9ULI3 1381 aa7.54□□□□□ -1.2
CPNE3-208ENST00000614678 TCERG1O14776 1098 aaKnown RBP7.54□□□□□ -1.2
CPNE3-208ENST00000614678 RPS6KA4O75676 772 aa7.54□□□□□ -1.2
CPNE3-208ENST00000614678 SPINK5Q9NQ38 1064 aaPredicted RBP7.54□□□□□ -1.2
CPNE3-208ENST00000614678 CCDC87Q9NVE4 849 aa7.54□□□□□ -1.2
CPNE3-208ENST00000614678 QSER1Q2KHR3 1735 aa7.54□□□□□ -1.2
CPNE3-208ENST00000614678 YBX3P16989 372 aaKnown RBP eCLIP7.54□□□□□ -1.2
CPNE3-208ENST00000614678 SOS1Q07889 1333 aaPredicted RBP7.53□□□□□ -1.2
CPNE3-208ENST00000614678 CNTNAP4Q9C0A0 1308 aa7.53□□□□□ -1.2
CPNE3-208ENST00000614678 SSFA2P28290 1259 aa7.53□□□□□ -1.2
CPNE3-208ENST00000614678 RFC4P35249 363 aa7.53□□□□□ -1.2
CPNE3-208ENST00000614678 TAF7Q15545 349 aaPredicted RBP7.53□□□□□ -1.2
CPNE3-208ENST00000614678 CARMIL3Q8ND23 1372 aa7.53□□□□□ -1.2
CPNE3-208ENST00000614678 ANP32CO43423 234 aa7.53□□□□□ -1.2
CPNE3-208ENST00000614678 MYL6BP14649 208 aa7.53□□□□□ -1.2
CPNE3-208ENST00000614678 EIF2S2P20042 333 aaKnown RBP7.53□□□□□ -1.2
CPNE3-208ENST00000614678 EIF4A1P60842 406 aaKnown RBP7.53□□□□□ -1.2
CPNE3-208ENST00000614678 TSR2Q969E8 191 aaKnown RBP7.53□□□□□ -1.2
CPNE3-208ENST00000614678 RUNDC1Q96C34 613 aa7.53□□□□□ -1.2
CPNE3-208ENST00000614678 N4BP2Q86UW6 1770 aaPredicted RBP7.53□□□□□ -1.2
CPNE3-208ENST00000614678 A0A0G2JLW4 131 aa7.53□□□□□ -1.2
CPNE3-208ENST00000614678 FAM177BA6PVY3 158 aa7.53□□□□□ -1.2
CPNE3-208ENST00000614678 HLFQ16534 295 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 KDM3BQ7LBC6 1761 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 COL15A1P39059 1388 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 USP42Q9H9J4 1324 aaKnown RBP7.52□□□□□ -1.21
CPNE3-208ENST00000614678 TBC1D9BQ66K14 1250 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 TTLL7Q6ZT98 887 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 FMNL2Q96PY5 1086 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 CICQ96RK0 1608 aaPredicted RBP7.52□□□□□ -1.21
CPNE3-208ENST00000614678 GIGYF1O75420 1035 aaPredicted RBP7.52□□□□□ -1.21
CPNE3-208ENST00000614678 CHRNA5P30532 468 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 EIF5P55010 431 aaKnown RBP7.52□□□□□ -1.21
CPNE3-208ENST00000614678 MIER1Q8N108 512 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 TSPYL6Q8N831 410 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 TSPYL4Q9UJ04 414 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 COL24A1Q17RW2 1714 aa7.52□□□□□ -1.21
CPNE3-208ENST00000614678 NFIXQ14938 502 aa7.51□□□□□ -1.21
CPNE3-208ENST00000614678 PLEKHG2Q9H7P9 1386 aa7.51□□□□□ -1.21
CPNE3-208ENST00000614678 RC3H1Q5TC82 1133 aaKnown RBP7.51□□□□□ -1.21
CPNE3-208ENST00000614678 MBIPQ9NS73 344 aa7.51□□□□□ -1.21
CPNE3-208ENST00000614678 PDIA6Q15084 440 aa7.51□□□□□ -1.21
CPNE3-208ENST00000614678 ZNF831Q5JPB2 1677 aa7.5□□□□□ -1.21
CPNE3-208ENST00000614678 POLRMTO00411 1230 aaKnown RBP7.5□□□□□ -1.21
CPNE3-208ENST00000614678 POLD1P28340 1107 aa7.5□□□□□ -1.21
CPNE3-208ENST00000614678 SYNE4Q8N205 404 aa7.5□□□□□ -1.21
CPNE3-208ENST00000614678 SLC16A10Q8TF71 515 aa7.5□□□□□ -1.21
CPNE3-208ENST00000614678 AFDNP55196 1824 aaKnown RBP7.5□□□□□ -1.21
CPNE3-208ENST00000614678 SNRPA1P09661 255 aaKnown RBP7.5□□□□□ -1.21
CPNE3-208ENST00000614678 LRP10Q7Z4F1 713 aa7.5□□□□□ -1.21
CPNE3-208ENST00000614678 C8orf58Q8NAV2 365 aa7.5□□□□□ -1.21
CPNE3-208ENST00000614678 ZBTB3Q9H5J0 574 aa7.5□□□□□ -1.21
CPNE3-208ENST00000614678 CAMTA2O94983 1202 aa7.49□□□□□ -1.21
CPNE3-208ENST00000614678 KCNA3P22001 575 aa7.49□□□□□ -1.21
CPNE3-208ENST00000614678 TM4SF1P30408 202 aa7.49□□□□□ -1.21
CPNE3-208ENST00000614678 AIMP1Q12904 312 aaKnown RBP7.49□□□□□ -1.21
CPNE3-208ENST00000614678 CHL1O00533 1208 aa7.49□□□□□ -1.21
CPNE3-208ENST00000614678 STARD3NLO95772 234 aa7.49□□□□□ -1.21
CPNE3-208ENST00000614678 NEFMP07197 916 aa7.49□□□□□ -1.21
CPNE3-208ENST00000614678 OLFM4Q6UX06 510 aa7.49□□□□□ -1.21
CPNE3-208ENST00000614678 DZIP3Q86Y13 1208 aaKnown RBP7.49□□□□□ -1.21
CPNE3-208ENST00000614678 VSIG10Q8N0Z9 540 aa7.49□□□□□ -1.21
CPNE3-208ENST00000614678 KIAA1551Q9HCM1 1747 aa7.49□□□□□ -1.21
CPNE3-208ENST00000614678 ZPR1O75312 459 aa7.48□□□□□ -1.21
CPNE3-208ENST00000614678 DPEP1P16444 411 aa7.48□□□□□ -1.21
CPNE3-208ENST00000614678 GPTP24298 496 aa7.48□□□□□ -1.21
CPNE3-208ENST00000614678 NARFQ9UHQ1 456 aa7.48□□□□□ -1.21
CPNE3-208ENST00000614678 HTATSF1O43719 755 aaKnown RBP7.48□□□□□ -1.21
CPNE3-208ENST00000614678 GPR162Q16538 588 aa7.48□□□□□ -1.21
CPNE3-208ENST00000614678 WWC1Q8IX03 1113 aa7.48□□□□□ -1.21
CPNE3-208ENST00000614678 NUTM1Q86Y26 1132 aa7.48□□□□□ -1.21
CPNE3-208ENST00000614678 CHPF2Q9P2E5 772 aa7.48□□□□□ -1.21
CPNE3-208ENST00000614678 ZNF219Q9P2Y4 722 aaPredicted RBP7.48□□□□□ -1.21
CPNE3-208ENST00000614678 JARID2Q92833 1246 aaPredicted RBP7.47□□□□□ -1.21
CPNE3-208ENST00000614678 PHAXQ9H814 394 aaKnown RBP7.47□□□□□ -1.21
CPNE3-208ENST00000614678 PXDNLA1KZ92 1463 aa7.47□□□□□ -1.21
CPNE3-208ENST00000614678 ZNF853P0CG23 659 aa7.47□□□□□ -1.21
CPNE3-208ENST00000614678 C3orf67Q6ZVT6 689 aa7.47□□□□□ -1.21
CPNE3-208ENST00000614678 FLAD1Q8NFF5 587 aa7.47□□□□□ -1.21
CPNE3-208ENST00000614678 CDCA7LQ96GN5 454 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms