RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	USP42	Q9H9J4	1324 aa	Known RBP	11.63	□□□□□ -0.55
SSBP4-208	ENST00000600628	SCN7A	Q01118	1682 aa		11.63	□□□□□ -0.55
SSBP4-208	ENST00000600628	DCAF8L1	A6NGE4	600 aa		11.63	□□□□□ -0.55
SSBP4-208	ENST00000600628	PNISR	Q8TF01	805 aa	Known RBP	11.63	□□□□□ -0.55
SSBP4-208	ENST00000600628	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.63	□□□□□ -0.55
SSBP4-208	ENST00000600628	ZBTB1	Q9Y2K1	713 aa		11.63	□□□□□ -0.55
SSBP4-208	ENST00000600628	MAPK8IP3	Q9UPT6	1336 aa		11.62	□□□□□ -0.55
SSBP4-208	ENST00000600628	BCOR	Q6W2J9	1755 aa		11.62	□□□□□ -0.55
SSBP4-208	ENST00000600628	RIPK4	P57078	832 aa		11.62	□□□□□ -0.55
SSBP4-208	ENST00000600628	NCBP3	Q53F19	620 aa	Known RBP	11.62	□□□□□ -0.55
SSBP4-208	ENST00000600628	MSL1	Q68DK7	614 aa		11.62	□□□□□ -0.55
SSBP4-208	ENST00000600628	TTC5	Q8N0Z6	440 aa		11.62	□□□□□ -0.55
SSBP4-208	ENST00000600628	AFDN	P55196	1824 aa	Known RBP	11.61	□□□□□ -0.55
SSBP4-208	ENST00000600628	NEFM	P07197	916 aa		11.61	□□□□□ -0.55
SSBP4-208	ENST00000600628	EIF4A1	P60842	406 aa	Known RBP	11.61	□□□□□ -0.55
SSBP4-208	ENST00000600628	NLGN1	Q8N2Q7	840 aa		11.61	□□□□□ -0.55
SSBP4-208	ENST00000600628	THUMPD2	Q9BTF0	503 aa	Known RBP	11.61	□□□□□ -0.55
SSBP4-208	ENST00000600628	BCL2L12	Q9HB09	334 aa		11.61	□□□□□ -0.55
SSBP4-208	ENST00000600628	USP16	Q9Y5T5	823 aa		11.61	□□□□□ -0.55
SSBP4-208	ENST00000600628	COL15A1	P39059	1388 aa		11.61	□□□□□ -0.55
SSBP4-208	ENST00000600628	BRCA1	P38398	1863 aa	Known RBP	11.61	□□□□□ -0.55
SSBP4-208	ENST00000600628	PRAMEF22	A3QJZ6	481 aa		11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	CHL1	O00533	1208 aa		11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	GIGYF1	O75420	1035 aa	Predicted RBP	11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	STARD3NL	O95772	234 aa		11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	SNRPA1	P09661	255 aa	Known RBP	11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	TM4SF1	P30408	202 aa		11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	IL6ST	P40189	918 aa	Predicted RBP	11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	WDR43	Q15061	677 aa	Known RBP eCLIP	11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	CCDC146	Q8IYE0	955 aa		11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	NARF	Q9UHQ1	456 aa		11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	CD2AP	Q9Y5K6	639 aa		11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	C10orf71	Q711Q0	1435 aa		11.6	□□□□□ -0.55
SSBP4-208	ENST00000600628	ZNF853	P0CG23	659 aa		11.59	□□□□□ -0.55
SSBP4-208	ENST00000600628	LMOD3	Q0VAK6	560 aa		11.59	□□□□□ -0.55
SSBP4-208	ENST00000600628	KLHL34	Q8N239	644 aa		11.59	□□□□□ -0.55
SSBP4-208	ENST00000600628	MIS18A	Q9NYP9	233 aa		11.59	□□□□□ -0.55
SSBP4-208	ENST00000600628	SRP68	Q9UHB9	627 aa	Known RBP	11.59	□□□□□ -0.55
SSBP4-208	ENST00000600628	NBPF26	B4DH59	902 aa		11.58	□□□□□ -0.56
SSBP4-208	ENST00000600628	RGL2	O15211	777 aa		11.58	□□□□□ -0.56
SSBP4-208	ENST00000600628	A1BG	P04217	495 aa		11.58	□□□□□ -0.56
SSBP4-208	ENST00000600628	RFC4	P35249	363 aa		11.58	□□□□□ -0.56
SSBP4-208	ENST00000600628	FKBP8	Q14318	412 aa		11.58	□□□□□ -0.56
SSBP4-208	ENST00000600628	NBPF10	Q6P3W6	841 aa	Known RBP	11.58	□□□□□ -0.56
SSBP4-208	ENST00000600628	LRP10	Q7Z4F1	713 aa		11.58	□□□□□ -0.56
SSBP4-208	ENST00000600628	NBPF15	Q8N660	670 aa		11.58	□□□□□ -0.56
SSBP4-208	ENST00000600628	CHD4	Q14839	1912 aa		11.57	□□□□□ -0.56
SSBP4-208	ENST00000600628	APAF1	O14727	1248 aa		11.57	□□□□□ -0.56
SSBP4-208	ENST00000600628	ANP32C	O43423	234 aa		11.57	□□□□□ -0.56
SSBP4-208	ENST00000600628	MMP10	P09238	476 aa		11.57	□□□□□ -0.56
SSBP4-208	ENST00000600628	DDR1	Q08345	913 aa		11.57	□□□□□ -0.56
SSBP4-208	ENST00000600628	NLGN2	Q8NFZ4	835 aa		11.57	□□□□□ -0.56
SSBP4-208	ENST00000600628	RRP7A	Q9Y3A4	280 aa	Known RBP	11.57	□□□□□ -0.56
SSBP4-208	ENST00000600628	POLRMT	O00411	1230 aa	Known RBP	11.56	□□□□□ -0.56
SSBP4-208	ENST00000600628	CCDC27	Q2M243	656 aa		11.56	□□□□□ -0.56
SSBP4-208	ENST00000600628	NUP98	P52948	1817 aa		11.56	□□□□□ -0.56
SSBP4-208	ENST00000600628	CAMTA2	O94983	1202 aa		11.55	□□□□□ -0.56
SSBP4-208	ENST00000600628	CANX	P27824	592 aa	Known RBP	11.55	□□□□□ -0.56
SSBP4-208	ENST00000600628	CFAP44	Q96MT7	982 aa		11.55	□□□□□ -0.56
SSBP4-208	ENST00000600628	PXDNL	A1KZ92	1463 aa		11.55	□□□□□ -0.56
SSBP4-208	ENST00000600628	ERBB4	Q15303	1308 aa		11.55	□□□□□ -0.56
SSBP4-208	ENST00000600628	ANKRD31	Q8N7Z5	1873 aa		11.55	□□□□□ -0.56
SSBP4-208	ENST00000600628	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.54	□□□□□ -0.56
SSBP4-208	ENST00000600628	DLEC1	Q9Y238	1755 aa		11.54	□□□□□ -0.56
SSBP4-208	ENST00000600628		A0A087WZG4	1122 aa		11.54	□□□□□ -0.56
SSBP4-208	ENST00000600628	NFIX	Q14938	502 aa		11.54	□□□□□ -0.56
SSBP4-208	ENST00000600628	PDIA6	Q15084	440 aa		11.54	□□□□□ -0.56
SSBP4-208	ENST00000600628	GPR162	Q16538	588 aa		11.54	□□□□□ -0.56
SSBP4-208	ENST00000600628	USPL1	Q5W0Q7	1092 aa		11.54	□□□□□ -0.56
SSBP4-208	ENST00000600628	TSPYL4	Q9UJ04	414 aa		11.54	□□□□□ -0.56
SSBP4-208	ENST00000600628	ARFGEF1	Q9Y6D6	1849 aa		11.53	□□□□□ -0.56
SSBP4-208	ENST00000600628	ZPR1	O75312	459 aa		11.53	□□□□□ -0.56
SSBP4-208	ENST00000600628	KCNA3	P22001	575 aa		11.53	□□□□□ -0.56
SSBP4-208	ENST00000600628	YY1	P25490	414 aa		11.53	□□□□□ -0.56
SSBP4-208	ENST00000600628	CLEC4G	Q6UXB4	293 aa		11.53	□□□□□ -0.56
SSBP4-208	ENST00000600628	MRS2	Q9HD23	443 aa		11.53	□□□□□ -0.56
SSBP4-208	ENST00000600628	HOXB7	P09629	217 aa		11.52	□□□□□ -0.57
SSBP4-208	ENST00000600628	TGFB2	P61812	414 aa		11.52	□□□□□ -0.57
SSBP4-208	ENST00000600628	NEUROD2	Q15784	382 aa		11.52	□□□□□ -0.57
SSBP4-208	ENST00000600628	YBX3	P16989	372 aa	Known RBP eCLIP	11.51	□□□□□ -0.57
SSBP4-208	ENST00000600628	PIP4K2A	P48426	406 aa	Predicted RBP	11.51	□□□□□ -0.57
SSBP4-208	ENST00000600628	WWC1	Q8IX03	1113 aa		11.51	□□□□□ -0.57
SSBP4-208	ENST00000600628	PELP1	Q8IZL8	1130 aa	Known RBP	11.51	□□□□□ -0.57
SSBP4-208	ENST00000600628	MBIP	Q9NS73	344 aa		11.51	□□□□□ -0.57
SSBP4-208	ENST00000600628	IFT57	Q9NWB7	429 aa		11.51	□□□□□ -0.57
SSBP4-208	ENST00000600628	TBC1D2B	Q9UPU7	963 aa		11.51	□□□□□ -0.57
SSBP4-208	ENST00000600628	PARP3	Q9Y6F1	533 aa		11.51	□□□□□ -0.57
SSBP4-208	ENST00000600628	ERVV-1	B6SEH8	477 aa		11.5	□□□□□ -0.57
SSBP4-208	ENST00000600628	GRIN3B	O60391	1043 aa		11.5	□□□□□ -0.57
SSBP4-208	ENST00000600628	KRT24	Q2M2I5	525 aa		11.5	□□□□□ -0.57
SSBP4-208	ENST00000600628	TBC1D9B	Q66K14	1250 aa		11.5	□□□□□ -0.57
SSBP4-208	ENST00000600628	IL16	Q14005	1332 aa		11.5	□□□□□ -0.57
SSBP4-208	ENST00000600628	ATP10D	Q9P241	1426 aa		11.5	□□□□□ -0.57
SSBP4-208	ENST00000600628	GNAI1	P63096	354 aa		11.49	□□□□□ -0.57
SSBP4-208	ENST00000600628	DZIP3	Q86Y13	1208 aa	Known RBP	11.49	□□□□□ -0.57
SSBP4-208	ENST00000600628	NGEF	Q8N5V2	710 aa		11.49	□□□□□ -0.57
SSBP4-208	ENST00000600628	CARMIL3	Q8ND23	1372 aa		11.49	□□□□□ -0.57
SSBP4-208	ENST00000600628	COL11A2	P13942	1736 aa	Predicted RBP	11.49	□□□□□ -0.57
SSBP4-208	ENST00000600628	ANKRD36C	Q5JPF3	1778 aa		11.49	□□□□□ -0.57
SSBP4-208	ENST00000600628	KLRG2	A4D1S0	409 aa	Predicted RBP	11.48	□□□□□ -0.57

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