RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CCDC146Q8IYE0 955 aa21.3■■□□□ 1
TRIM28-213ENST00000598355 SYT17Q9BSW7 474 aa21.3■■□□□ 1
TRIM28-213ENST00000598355 TEX13AQ9BXU3 409 aaPredicted RBP21.3■■□□□ 1
TRIM28-213ENST00000598355 COL15A1P39059 1388 aa21.3■■□□□ 1
TRIM28-213ENST00000598355 USP42Q9H9J4 1324 aaKnown RBP21.29■■□□□ 1
TRIM28-213ENST00000598355 ANP32CO43423 234 aa21.29■■□□□ 1
TRIM28-213ENST00000598355 THUMPD2Q9BTF0 503 aaKnown RBP21.29■■□□□ 1
TRIM28-213ENST00000598355 NRXN2Q9P2S2 1712 aa21.29■■□□□ 1
TRIM28-213ENST00000598355 GYS1P13807 737 aa21.28■■□□□ 1
TRIM28-213ENST00000598355 RIPK4P57078 832 aa21.28■■□□□ 1
TRIM28-213ENST00000598355 LMOD3Q0VAK6 560 aa21.28■■□□□ 1
TRIM28-213ENST00000598355 PNISRQ8TF01 805 aaKnown RBP21.28■■□□□ 1
TRIM28-213ENST00000598355 STARD3NLO95772 234 aa21.27■■□□□ 1
TRIM28-213ENST00000598355 AFDNP55196 1824 aaKnown RBP21.27■□□□□ 0.99
TRIM28-213ENST00000598355 RFC4P35249 363 aa21.26■□□□□ 0.99
TRIM28-213ENST00000598355 TRIM35Q9UPQ4 493 aa21.26■□□□□ 0.99
TRIM28-213ENST00000598355 EIF5P55010 431 aaKnown RBP21.25■□□□□ 0.99
TRIM28-213ENST00000598355 BABAM1Q9NWV8 329 aa21.25■□□□□ 0.99
TRIM28-213ENST00000598355 SNRPA1P09661 255 aaKnown RBP21.24■□□□□ 0.99
TRIM28-213ENST00000598355 NLGN1Q8N2Q7 840 aa21.24■□□□□ 0.99
TRIM28-213ENST00000598355 RRP7AQ9Y3A4 280 aaKnown RBP21.24■□□□□ 0.99
TRIM28-213ENST00000598355 BRCA1P38398 1863 aaKnown RBP21.24■□□□□ 0.99
TRIM28-213ENST00000598355 C10orf71Q711Q0 1435 aa21.23■□□□□ 0.99
TRIM28-213ENST00000598355 PRAMEF22A3QJZ6 481 aa21.23■□□□□ 0.99
TRIM28-213ENST00000598355 SRP68Q9UHB9 627 aaKnown RBP21.23■□□□□ 0.99
TRIM28-213ENST00000598355 USP16Q9Y5T5 823 aa21.23■□□□□ 0.99
TRIM28-213ENST00000598355 IL6STP40189 918 aaPredicted RBP21.22■□□□□ 0.99
TRIM28-213ENST00000598355 EIF4A1P60842 406 aaKnown RBP21.22■□□□□ 0.99
TRIM28-213ENST00000598355 MIS18AQ9NYP9 233 aa21.22■□□□□ 0.99
TRIM28-213ENST00000598355 NARFQ9UHQ1 456 aa21.22■□□□□ 0.99
TRIM28-213ENST00000598355 GOLGB1Q14789 3259 aaKnown RBP21.22■□□□□ 0.99
TRIM28-213ENST00000598355 MMP10P09238 476 aa21.21■□□□□ 0.99
TRIM28-213ENST00000598355 CD2APQ9Y5K6 639 aa21.21■□□□□ 0.99
TRIM28-213ENST00000598355 UTRNP46939 3433 aa21.2■□□□□ 0.98
TRIM28-213ENST00000598355 CANXP27824 592 aaKnown RBP21.2■□□□□ 0.98
TRIM28-213ENST00000598355 MRS2Q9HD23 443 aa21.2■□□□□ 0.98
TRIM28-213ENST00000598355 CHD4Q14839 1912 aa21.19■□□□□ 0.98
TRIM28-213ENST00000598355 GIGYF1O75420 1035 aaPredicted RBP21.19■□□□□ 0.98
TRIM28-213ENST00000598355 A1BGP04217 495 aa21.19■□□□□ 0.98
TRIM28-213ENST00000598355 FKBP8Q14318 412 aa21.19■□□□□ 0.98
TRIM28-213ENST00000598355 NLGN2Q8NFZ4 835 aa21.19■□□□□ 0.98
TRIM28-213ENST00000598355 BCL2L12Q9HB09 334 aa21.19■□□□□ 0.98
TRIM28-213ENST00000598355 N4BP2Q86UW6 1770 aaPredicted RBP21.18■□□□□ 0.98
TRIM28-213ENST00000598355 APAF1O14727 1248 aa21.18■□□□□ 0.98
TRIM28-213ENST00000598355 USPL1Q5W0Q7 1092 aa21.18■□□□□ 0.98
TRIM28-213ENST00000598355 TSPYL4Q9UJ04 414 aa21.18■□□□□ 0.98
TRIM28-213ENST00000598355 CHL1O00533 1208 aa21.17■□□□□ 0.98
TRIM28-213ENST00000598355 NEUROD2Q15784 382 aa21.17■□□□□ 0.98
TRIM28-213ENST00000598355 DLEC1Q9Y238 1755 aa21.16■□□□□ 0.98
TRIM28-213ENST00000598355 PXDNLA1KZ92 1463 aa21.16■□□□□ 0.98
TRIM28-213ENST00000598355 A0A087WZG4 1122 aa21.16■□□□□ 0.98
TRIM28-213ENST00000598355 NBPF26B4DH59 902 aa21.16■□□□□ 0.98
TRIM28-213ENST00000598355 ZPR1O75312 459 aa21.16■□□□□ 0.98
TRIM28-213ENST00000598355 TM4SF1P30408 202 aa21.16■□□□□ 0.98
TRIM28-213ENST00000598355 DDR1Q08345 913 aa21.16■□□□□ 0.98
TRIM28-213ENST00000598355 NBPF10Q6P3W6 841 aaKnown RBP21.16■□□□□ 0.98
TRIM28-213ENST00000598355 NBPF15Q8N660 670 aa21.16■□□□□ 0.98
TRIM28-213ENST00000598355 NUP98P52948 1817 aa21.15■□□□□ 0.98
TRIM28-213ENST00000598355 ANKRD31Q8N7Z5 1873 aa21.14■□□□□ 0.97
TRIM28-213ENST00000598355 POLRMTO00411 1230 aaKnown RBP21.14■□□□□ 0.97
TRIM28-213ENST00000598355 NCBP3Q53F19 620 aaKnown RBP21.14■□□□□ 0.97
TRIM28-213ENST00000598355 ERBB4Q15303 1308 aa21.13■□□□□ 0.97
TRIM28-213ENST00000598355 RGL2O15211 777 aa21.13■□□□□ 0.97
TRIM28-213ENST00000598355 CAMTA2O94983 1202 aa21.13■□□□□ 0.97
TRIM28-213ENST00000598355 ZNF853P0CG23 659 aa21.13■□□□□ 0.97
TRIM28-213ENST00000598355 KLHL34Q8N239 644 aa21.13■□□□□ 0.97
TRIM28-213ENST00000598355 NFIXQ14938 502 aa21.12■□□□□ 0.97
TRIM28-213ENST00000598355 CCDC27Q2M243 656 aa21.12■□□□□ 0.97
TRIM28-213ENST00000598355 CFAP44Q96MT7 982 aa21.12■□□□□ 0.97
TRIM28-213ENST00000598355 PARP3Q9Y6F1 533 aa21.12■□□□□ 0.97
TRIM28-213ENST00000598355 ARFGEF1Q9Y6D6 1849 aa21.12■□□□□ 0.97
TRIM28-213ENST00000598355 PIP4K2AP48426 406 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-213ENST00000598355 DZIP3Q86Y13 1208 aaKnown RBP21.1■□□□□ 0.97
TRIM28-213ENST00000598355 ANKRD36CQ5JPF3 1778 aa21.1■□□□□ 0.97
TRIM28-213ENST00000598355 LRP10Q7Z4F1 713 aa21.09■□□□□ 0.97
TRIM28-213ENST00000598355 IFT57Q9NWB7 429 aa21.09■□□□□ 0.97
TRIM28-213ENST00000598355 TBC1D2BQ9UPU7 963 aa21.09■□□□□ 0.97
TRIM28-213ENST00000598355 HOXB7P09629 217 aa21.08■□□□□ 0.97
TRIM28-213ENST00000598355 COL11A2P13942 1736 aaPredicted RBP21.08■□□□□ 0.97
TRIM28-213ENST00000598355 CALD1Q05682 793 aaKnown RBP21.08■□□□□ 0.97
TRIM28-213ENST00000598355 ZNF330Q9Y3S2 320 aaPredicted RBP21.08■□□□□ 0.97
TRIM28-213ENST00000598355 TGFB2P61812 414 aa21.07■□□□□ 0.96
TRIM28-213ENST00000598355 TBC1D9BQ66K14 1250 aa21.07■□□□□ 0.96
TRIM28-213ENST00000598355 CLEC4GQ6UXB4 293 aa21.07■□□□□ 0.96
TRIM28-213ENST00000598355 MBIPQ9NS73 344 aa21.07■□□□□ 0.96
TRIM28-213ENST00000598355 CARMIL3Q8ND23 1372 aa21.07■□□□□ 0.96
TRIM28-213ENST00000598355 DCAF8L1A6NGE4 600 aa21.06■□□□□ 0.96
TRIM28-213ENST00000598355 YBX3P16989 372 aaKnown RBP eCLIP21.06■□□□□ 0.962e-27■□□□□ 9.3
TRIM28-213ENST00000598355 PDIA6Q15084 440 aa21.06■□□□□ 0.96
TRIM28-213ENST00000598355 KRT24Q2M2I5 525 aa21.06■□□□□ 0.96
TRIM28-213ENST00000598355 GNAI1P63096 354 aa21.05■□□□□ 0.96
TRIM28-213ENST00000598355 NPM2Q86SE8 214 aaKnown RBP21.05■□□□□ 0.96
TRIM28-213ENST00000598355 ATP10DQ9P241 1426 aa21.04■□□□□ 0.96
TRIM28-213ENST00000598355 WWC1Q8IX03 1113 aa21.04■□□□□ 0.96
TRIM28-213ENST00000598355 ARFGEF2Q9Y6D5 1785 aa21.04■□□□□ 0.96
TRIM28-213ENST00000598355 SERPINB2P05120 415 aa21.03■□□□□ 0.96
TRIM28-213ENST00000598355 LAS1LQ9Y4W2 734 aaKnown RBP21.03■□□□□ 0.96
TRIM28-213ENST00000598355 ERVV-1B6SEH8 477 aa21.02■□□□□ 0.96
TRIM28-213ENST00000598355 ZNF652Q9Y2D9 606 aa21.02■□□□□ 0.96
TRIM28-213ENST00000598355 IL16Q14005 1332 aa21.02■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms