RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 SSFA2P28290 1259 aa12.57□□□□□ -0.4
DDX39A-220ENST00000593008 CRKLP46109 303 aaKnown RBP12.57□□□□□ -0.4
DDX39A-220ENST00000593008 TTC5Q8N0Z6 440 aa12.57□□□□□ -0.4
DDX39A-220ENST00000593008 IFT57Q9NWB7 429 aa12.57□□□□□ -0.4
DDX39A-220ENST00000593008 TSPYL4Q9UJ04 414 aa12.57□□□□□ -0.4
DDX39A-220ENST00000593008 RTCBQ9Y3I0 505 aaKnown RBP12.57□□□□□ -0.4
DDX39A-220ENST00000593008 CHL1O00533 1208 aa12.56□□□□□ -0.4
DDX39A-220ENST00000593008 GOLGA2Q08379 1002 aa12.56□□□□□ -0.4
DDX39A-220ENST00000593008 SLFN5Q08AF3 891 aa12.56□□□□□ -0.4
DDX39A-220ENST00000593008 TAF7Q15545 349 aaPredicted RBP12.56□□□□□ -0.4
DDX39A-220ENST00000593008 TRAPPC3LQ5T215 181 aa12.56□□□□□ -0.4
DDX39A-220ENST00000593008 WDR63Q8IWG1 891 aa12.56□□□□□ -0.4
DDX39A-220ENST00000593008 SYT17Q9BSW7 474 aa12.56□□□□□ -0.4
DDX39A-220ENST00000593008 TJP1Q07157 1748 aa12.56□□□□□ -0.4
DDX39A-220ENST00000593008 CNTNAP4Q9C0A0 1308 aa12.56□□□□□ -0.4
DDX39A-220ENST00000593008 NCBP3Q53F19 620 aaKnown RBP12.55□□□□□ -0.4
DDX39A-220ENST00000593008 RC3H1Q5TC82 1133 aaKnown RBP12.55□□□□□ -0.4
DDX39A-220ENST00000593008 DUSP27Q5VZP5 1158 aa12.55□□□□□ -0.4
DDX39A-220ENST00000593008 INTS5Q6P9B9 1019 aaKnown RBP12.55□□□□□ -0.4
DDX39A-220ENST00000593008 TSPYL6Q8N831 410 aa12.55□□□□□ -0.4
DDX39A-220ENST00000593008 ZNF496Q96IT1 587 aaPredicted RBP12.55□□□□□ -0.4
DDX39A-220ENST00000593008 CFAP44Q96MT7 982 aa12.55□□□□□ -0.4
DDX39A-220ENST00000593008 IL16Q14005 1332 aa12.55□□□□□ -0.4
DDX39A-220ENST00000593008 ELL2O00472 640 aaPredicted RBP12.54□□□□□ -0.4
DDX39A-220ENST00000593008 RPS6KA4O75676 772 aa12.54□□□□□ -0.4
DDX39A-220ENST00000593008 EXOSC9Q06265 439 aaKnown RBP12.54□□□□□ -0.4
DDX39A-220ENST00000593008 ZNF790Q6PG37 636 aa12.54□□□□□ -0.4
DDX39A-220ENST00000593008 C8orf58Q8NAV2 365 aa12.54□□□□□ -0.4
DDX39A-220ENST00000593008 ARHGEF1Q92888 912 aaKnown RBP12.54□□□□□ -0.4
DDX39A-220ENST00000593008 UBR3Q6ZT12 1888 aa12.54□□□□□ -0.4
DDX39A-220ENST00000593008 E9PSI1 815 aa12.53□□□□□ -0.4
DDX39A-220ENST00000593008 TCERG1O14776 1098 aaKnown RBP12.53□□□□□ -0.4
DDX39A-220ENST00000593008 CYP19A1P11511 503 aaPredicted RBP12.53□□□□□ -0.4
DDX39A-220ENST00000593008 RFC4P35249 363 aa12.53□□□□□ -0.4
DDX39A-220ENST00000593008 EIF4A1P60842 406 aaKnown RBP12.53□□□□□ -0.4
DDX39A-220ENST00000593008 GNAI1P63096 354 aa12.53□□□□□ -0.4
DDX39A-220ENST00000593008 TRMT2AQ8IZ69 625 aaKnown RBP12.53□□□□□ -0.4
DDX39A-220ENST00000593008 CCDC87Q9NVE4 849 aa12.53□□□□□ -0.4
DDX39A-220ENST00000593008 ZNF831Q5JPB2 1677 aa12.52□□□□□ -0.4
DDX39A-220ENST00000593008 PIP4K2AP48426 406 aaPredicted RBP12.52□□□□□ -0.41
DDX39A-220ENST00000593008 NGEFQ8N5V2 710 aa12.52□□□□□ -0.41
DDX39A-220ENST00000593008 NLGN2Q8NFZ4 835 aa12.52□□□□□ -0.41
DDX39A-220ENST00000593008 NECTIN2Q92692 538 aa12.52□□□□□ -0.41
DDX39A-220ENST00000593008 SRP68Q9UHB9 627 aaKnown RBP12.52□□□□□ -0.41
DDX39A-220ENST00000593008 COL5A3P25940 1745 aaPredicted RBP12.51□□□□□ -0.41
DDX39A-220ENST00000593008 MMP10P09238 476 aa12.51□□□□□ -0.41
DDX39A-220ENST00000593008 ADRA2BP18089 450 aa12.51□□□□□ -0.41
DDX39A-220ENST00000593008 CANXP27824 592 aaKnown RBP12.51□□□□□ -0.41
DDX39A-220ENST00000593008 CALD1Q05682 793 aaKnown RBP12.51□□□□□ -0.41
DDX39A-220ENST00000593008 VSIG10Q8N0Z9 540 aa12.51□□□□□ -0.41
DDX39A-220ENST00000593008 FMNL2Q96PY5 1086 aa12.51□□□□□ -0.41
DDX39A-220ENST00000593008 ZBTB1Q9Y2K1 713 aa12.51□□□□□ -0.41
DDX39A-220ENST00000593008 HEG1Q9ULI3 1381 aa12.51□□□□□ -0.41
DDX39A-220ENST00000593008 DCAF8L1A6NGE4 600 aa12.5□□□□□ -0.41
DDX39A-220ENST00000593008 GYS1P13807 737 aa12.5□□□□□ -0.41
DDX39A-220ENST00000593008 PELP1Q8IZL8 1130 aaKnown RBP12.5□□□□□ -0.41
DDX39A-220ENST00000593008 MYH16Q9H6N6 1097 aa12.5□□□□□ -0.41
DDX39A-220ENST00000593008 SOS1Q07889 1333 aaPredicted RBP12.5□□□□□ -0.41
DDX39A-220ENST00000593008 LAMB4A4D0S4 1761 aa12.5□□□□□ -0.41
DDX39A-220ENST00000593008 MYH14Q7Z406 1995 aaKnown RBP12.5□□□□□ -0.41
DDX39A-220ENST00000593008 STARD3NLO95772 234 aa12.49□□□□□ -0.41
DDX39A-220ENST00000593008 ANXA1P04083 346 aa12.49□□□□□ -0.41
DDX39A-220ENST00000593008 ZNF330Q9Y3S2 320 aaPredicted RBP12.49□□□□□ -0.41
DDX39A-220ENST00000593008 GOLGB1Q14789 3259 aaKnown RBP12.49□□□□□ -0.41
DDX39A-220ENST00000593008 UTRNP46939 3433 aa12.49□□□□□ -0.41
DDX39A-220ENST00000593008 COL24A1Q17RW2 1714 aa12.48□□□□□ -0.41
DDX39A-220ENST00000593008 USP42Q9H9J4 1324 aaKnown RBP12.48□□□□□ -0.41
DDX39A-220ENST00000593008 GIGYF1O75420 1035 aaPredicted RBP12.48□□□□□ -0.41
DDX39A-220ENST00000593008 FKBP8Q14318 412 aa12.48□□□□□ -0.41
DDX39A-220ENST00000593008 PROSER3Q2NL68 480 aa12.48□□□□□ -0.41
DDX39A-220ENST00000593008 USPL1Q5W0Q7 1092 aa12.48□□□□□ -0.41
DDX39A-220ENST00000593008 NLGN1Q8N2Q7 840 aa12.48□□□□□ -0.41
DDX39A-220ENST00000593008 BCL2L13Q9BXK5 485 aa12.48□□□□□ -0.41
DDX39A-220ENST00000593008 WWC3Q9ULE0 1092 aa12.48□□□□□ -0.41
DDX39A-220ENST00000593008 USP16Q9Y5T5 823 aa12.48□□□□□ -0.41
DDX39A-220ENST00000593008 CICQ96RK0 1608 aaPredicted RBP12.48□□□□□ -0.41
DDX39A-220ENST00000593008 COL15A1P39059 1388 aa12.47□□□□□ -0.41
DDX39A-220ENST00000593008 ZPR1O75312 459 aa12.47□□□□□ -0.41
DDX39A-220ENST00000593008 A1BGP04217 495 aa12.47□□□□□ -0.41
DDX39A-220ENST00000593008 GPR162Q16538 588 aa12.47□□□□□ -0.41
DDX39A-220ENST00000593008 TWISTNBQ3B726 338 aaPredicted RBP12.47□□□□□ -0.41
DDX39A-220ENST00000593008 TEX13AQ9BXU3 409 aaPredicted RBP12.47□□□□□ -0.41
DDX39A-220ENST00000593008 EIF2S2P20042 333 aaKnown RBP12.46□□□□□ -0.41
DDX39A-220ENST00000593008 BABAM1Q9NWV8 329 aa12.46□□□□□ -0.41
DDX39A-220ENST00000593008 CD2APQ9Y5K6 639 aa12.46□□□□□ -0.41
DDX39A-220ENST00000593008 NBPF26B4DH59 902 aa12.45□□□□□ -0.42
DDX39A-220ENST00000593008 VAMP4O75379 141 aa12.45□□□□□ -0.42
DDX39A-220ENST00000593008 SNRPA1P09661 255 aaKnown RBP12.45□□□□□ -0.42
DDX39A-220ENST00000593008 EIF5P55010 431 aaKnown RBP12.45□□□□□ -0.42
DDX39A-220ENST00000593008 NBPF10Q6P3W6 841 aaKnown RBP12.45□□□□□ -0.42
DDX39A-220ENST00000593008 NBPF15Q8N660 670 aa12.45□□□□□ -0.42
DDX39A-220ENST00000593008 NARFQ9UHQ1 456 aa12.45□□□□□ -0.42
DDX39A-220ENST00000593008 PARP3Q9Y6F1 533 aa12.45□□□□□ -0.42
DDX39A-220ENST00000593008 C4AP0C0L4 1744 aa12.45□□□□□ -0.42
DDX39A-220ENST00000593008 DDR1Q08345 913 aa12.44□□□□□ -0.42
DDX39A-220ENST00000593008 HDGFL1Q5TGJ6 251 aa12.44□□□□□ -0.42
DDX39A-220ENST00000593008 CHPF2Q9P2E5 772 aa12.44□□□□□ -0.42
DDX39A-220ENST00000593008 TBC1D2BQ9UPU7 963 aa12.44□□□□□ -0.42
DDX39A-220ENST00000593008 YBX3P16989 372 aaKnown RBP eCLIP12.43□□□□□ -0.42
DDX39A-220ENST00000593008 PDIA6Q15084 440 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms