RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 MCM10Q7L590 875 aa13.23□□□□□ -0.29
VPS4B-206ENST00000591475 ZGPATQ8N5A5 531 aaKnown RBP13.23□□□□□ -0.29
VPS4B-206ENST00000591475 OSBPL3Q9H4L5 887 aa13.23□□□□□ -0.29
VPS4B-206ENST00000591475 CHRNA2Q15822 529 aa13.23□□□□□ -0.29
VPS4B-206ENST00000591475 SLC4A2P04920 1241 aa13.22□□□□□ -0.29
VPS4B-206ENST00000591475 NBPF6Q5VWK0 638 aa13.22□□□□□ -0.29
VPS4B-206ENST00000591475 NBPF4Q96M43 638 aa13.22□□□□□ -0.29
VPS4B-206ENST00000591475 COL22A1Q8NFW1 1626 aaPredicted RBP13.22□□□□□ -0.29
VPS4B-206ENST00000591475 CRB1P82279 1406 aa13.22□□□□□ -0.29
VPS4B-206ENST00000591475 MCM2P49736 904 aa13.22□□□□□ -0.29
VPS4B-206ENST00000591475 CCT4P50991 539 aaKnown RBP13.22□□□□□ -0.29
VPS4B-206ENST00000591475 PDE1AP54750 535 aa13.22□□□□□ -0.29
VPS4B-206ENST00000591475 GPT2Q8TD30 523 aa13.22□□□□□ -0.29
VPS4B-206ENST00000591475 RBSNQ9H1K0 784 aa13.22□□□□□ -0.29
VPS4B-206ENST00000591475 ZDHHC9Q9Y397 364 aa13.22□□□□□ -0.29
VPS4B-206ENST00000591475 ABCA3Q99758 1704 aa13.21□□□□□ -0.29
VPS4B-206ENST00000591475 OFD1O75665 1012 aa13.21□□□□□ -0.29
VPS4B-206ENST00000591475 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.21□□□□□ -0.29
VPS4B-206ENST00000591475 KIAA1211Q6ZU35 1233 aa13.2□□□□□ -0.3
VPS4B-206ENST00000591475 PDLIM2Q96JY6 352 aa13.2□□□□□ -0.3
VPS4B-206ENST00000591475 COL18A1P39060 1754 aa13.2□□□□□ -0.3
VPS4B-206ENST00000591475 MCCP23508 829 aa13.2□□□□□ -0.3
VPS4B-206ENST00000591475 PRIM1P49642 420 aaKnown RBP13.2□□□□□ -0.3
VPS4B-206ENST00000591475 MBD3O95983 291 aa13.19□□□□□ -0.3
VPS4B-206ENST00000591475 CSB-PGBD3P0DP91 1061 aa13.19□□□□□ -0.3
VPS4B-206ENST00000591475 NEK4P51957 841 aa13.19□□□□□ -0.3
VPS4B-206ENST00000591475 LRSAM1Q6UWE0 723 aa13.19□□□□□ -0.3
VPS4B-206ENST00000591475 RBM27Q9P2N5 1060 aaKnown RBP13.19□□□□□ -0.3
VPS4B-206ENST00000591475 GNAI2P04899 355 aa13.18□□□□□ -0.3
VPS4B-206ENST00000591475 SLC4A10Q6U841 1118 aa13.18□□□□□ -0.3
VPS4B-206ENST00000591475 USHBP1Q8N6Y0 703 aa13.18□□□□□ -0.3
VPS4B-206ENST00000591475 TMX3Q96JJ7 454 aa13.18□□□□□ -0.3
VPS4B-206ENST00000591475 ESYT1Q9BSJ8 1104 aa13.18□□□□□ -0.3
VPS4B-206ENST00000591475 NLRP2Q9NX02 1062 aa13.18□□□□□ -0.3
VPS4B-206ENST00000591475 N4BP2Q86UW6 1770 aaPredicted RBP13.18□□□□□ -0.3
VPS4B-206ENST00000591475 NCAPD2Q15021 1401 aa13.18□□□□□ -0.3
VPS4B-206ENST00000591475 FAM208AQ9UK61 1670 aaKnown RBP13.18□□□□□ -0.3
VPS4B-206ENST00000591475 TERF1P54274 439 aa13.18□□□□□ -0.3
VPS4B-206ENST00000591475 NOL7Q9UMY1 257 aaKnown RBP13.18□□□□□ -0.3
VPS4B-206ENST00000591475 JCADQ9P266 1359 aa13.18□□□□□ -0.3
VPS4B-206ENST00000591475 CAMTA1Q9Y6Y1 1673 aa13.18□□□□□ -0.3
VPS4B-206ENST00000591475 CACNA1FO60840 1977 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 G2E3Q7L622 706 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 TMEM63CQ9P1W3 806 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 TSPYL4Q9UJ04 414 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 WDR17Q8IZU2 1322 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 LMO7Q8WWI1 1683 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 F6X3S4 739 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 ZNF500O60304 480 aaPredicted RBP13.17□□□□□ -0.3
VPS4B-206ENST00000591475 ANAPC15P60006 121 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 CUL4AQ13619 759 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 RTF1Q92541 710 aaKnown RBP13.17□□□□□ -0.3
VPS4B-206ENST00000591475 SALL3Q9BXA9 1300 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 LRRCC1Q9C099 1032 aa13.17□□□□□ -0.3
VPS4B-206ENST00000591475 RGPD5Q99666 1765 aa13.16□□□□□ -0.3
VPS4B-206ENST00000591475 COL5A2P05997 1499 aaPredicted RBP13.16□□□□□ -0.3
VPS4B-206ENST00000591475 BRD1O95696 1058 aa13.16□□□□□ -0.3
VPS4B-206ENST00000591475 EVA1CP58658 441 aa13.16□□□□□ -0.3
VPS4B-206ENST00000591475 MTHFSDQ2M296 383 aaKnown RBP13.16□□□□□ -0.3
VPS4B-206ENST00000591475 MIS18AQ9NYP9 233 aa13.16□□□□□ -0.3
VPS4B-206ENST00000591475 EXOC6BQ9Y2D4 811 aa13.16□□□□□ -0.3
VPS4B-206ENST00000591475 SYCE3A1L190 88 aa13.15□□□□□ -0.3
VPS4B-206ENST00000591475 GNAI3P08754 354 aa13.15□□□□□ -0.3
VPS4B-206ENST00000591475 MX1P20591 662 aa13.15□□□□□ -0.3
VPS4B-206ENST00000591475 INTS4Q96HW7 963 aaKnown RBP13.15□□□□□ -0.3
VPS4B-206ENST00000591475 STK31Q9BXU1 1019 aa13.15□□□□□ -0.3
VPS4B-206ENST00000591475 BTG4Q9NY30 223 aa13.15□□□□□ -0.3
VPS4B-206ENST00000591475 MCM5P33992 734 aa13.15□□□□□ -0.3
VPS4B-206ENST00000591475 AMOTQ4VCS5 1084 aa13.15□□□□□ -0.3
VPS4B-206ENST00000591475 FOXD4L5Q5VV16 416 aaPredicted RBP13.15□□□□□ -0.3
VPS4B-206ENST00000591475 TOM1L2Q6ZVM7 507 aa13.15□□□□□ -0.3
VPS4B-206ENST00000591475 FOXD4L4Q8WXT5 416 aaPredicted RBP13.15□□□□□ -0.3
VPS4B-206ENST00000591475 RAPGEF4Q8WZA2 1011 aa13.15□□□□□ -0.3
VPS4B-206ENST00000591475 LRRC37A3O60309 1634 aa13.14□□□□□ -0.31
VPS4B-206ENST00000591475 NUTM2BA6NNL0 878 aaPredicted RBP13.14□□□□□ -0.31
VPS4B-206ENST00000591475 NUTM2EB1AL46 878 aaPredicted RBP13.14□□□□□ -0.31
VPS4B-206ENST00000591475 ADAMTS2O95450 1211 aa13.14□□□□□ -0.31
VPS4B-206ENST00000591475 NUTM2AQ8IVF1 878 aaPredicted RBP13.14□□□□□ -0.31
VPS4B-206ENST00000591475 SYAP1Q96A49 352 aaPredicted RBP13.14□□□□□ -0.31
VPS4B-206ENST00000591475 SRCIN1Q9C0H9 1055 aa13.14□□□□□ -0.31
VPS4B-206ENST00000591475 CCDC39Q9UFE4 941 aa13.14□□□□□ -0.31
VPS4B-206ENST00000591475 NSFL1CQ9UNZ2 370 aaKnown RBP13.14□□□□□ -0.31
VPS4B-206ENST00000591475 ZKSCAN5Q9Y2L8 839 aa13.14□□□□□ -0.31
VPS4B-206ENST00000591475 COL14A1Q05707 1796 aaKnown RBP13.14□□□□□ -0.31
VPS4B-206ENST00000591475 PLEKHG2Q9H7P9 1386 aa13.14□□□□□ -0.31
VPS4B-206ENST00000591475 SPATA31A6Q5VVP1 1343 aa13.14□□□□□ -0.31
VPS4B-206ENST00000591475 CHMLP26374 656 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 PLEKHO1Q53GL0 409 aaPredicted RBP13.13□□□□□ -0.31
VPS4B-206ENST00000591475 CHAMP1Q96JM3 812 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 PDCL3Q9H2J4 239 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 STRN4Q9NRL3 753 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.13□□□□□ -0.31
VPS4B-206ENST00000591475 RGPD2P0DJD1 1756 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 TRIM6-TRIM34B2RNG4 842 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 HTATSF1O43719 755 aaKnown RBP13.13□□□□□ -0.31
VPS4B-206ENST00000591475 HSPA1LP34931 641 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 ATP8B2P98198 1209 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 CSPP1Q1MSJ5 1256 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 TSHZ3Q63HK5 1081 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 RILPL2Q969X0 211 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms