RNA–Protein interactions for RNA: ENST00000588935.1

CNN1-208, Transcript of calponin 1, human

TSL 5

Gene CNN1, Length 700 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNN1-208	ENST00000588935	GNPAT	O15228	680 aa		18.91	■□□□□ 0.62
CNN1-208	ENST00000588935	STARD3NL	O95772	234 aa		18.91	■□□□□ 0.62
CNN1-208	ENST00000588935	EXOSC9	Q06265	439 aa	Known RBP	18.91	■□□□□ 0.62
CNN1-208	ENST00000588935	SLFN5	Q08AF3	891 aa		18.91	■□□□□ 0.62
CNN1-208	ENST00000588935	DUSP27	Q5VZP5	1158 aa		18.91	■□□□□ 0.62
CNN1-208	ENST00000588935	TSPYL6	Q8N831	410 aa		18.91	■□□□□ 0.62
CNN1-208	ENST00000588935	TEX13A	Q9BXU3	409 aa	Predicted RBP	18.91	■□□□□ 0.62
CNN1-208	ENST00000588935	TFCP2L1	Q9NZI6	479 aa		18.91	■□□□□ 0.62
CNN1-208	ENST00000588935	ZNF330	Q9Y3S2	320 aa	Predicted RBP	18.91	■□□□□ 0.62
CNN1-208	ENST00000588935	MYH14	Q7Z406	1995 aa	Known RBP	18.9	■□□□□ 0.62
CNN1-208	ENST00000588935	MSH5	O43196	834 aa		18.9	■□□□□ 0.62
CNN1-208	ENST00000588935	PHF14	O94880	888 aa		18.9	■□□□□ 0.62
CNN1-208	ENST00000588935	R3HDM1	Q15032	1099 aa	Known RBP	18.9	■□□□□ 0.62
CNN1-208	ENST00000588935	SLC15A2	Q16348	729 aa		18.9	■□□□□ 0.62
CNN1-208	ENST00000588935	AKT1S1	Q96B36	256 aa		18.9	■□□□□ 0.62
CNN1-208	ENST00000588935		E9PSI1	815 aa		18.89	■□□□□ 0.61
CNN1-208	ENST00000588935	INTS5	Q6P9B9	1019 aa	Known RBP	18.89	■□□□□ 0.61
CNN1-208	ENST00000588935	CCDC87	Q9NVE4	849 aa		18.89	■□□□□ 0.61
CNN1-208	ENST00000588935	C4B	P0C0L5	1744 aa		18.88	■□□□□ 0.61
CNN1-208	ENST00000588935	TCERG1	O14776	1098 aa	Known RBP	18.88	■□□□□ 0.61
CNN1-208	ENST00000588935	ARX	Q96QS3	562 aa		18.88	■□□□□ 0.61
CNN1-208	ENST00000588935	ZBTB1	Q9Y2K1	713 aa		18.88	■□□□□ 0.61
CNN1-208	ENST00000588935	ZBED9	Q6R2W3	1325 aa		18.87	■□□□□ 0.61
CNN1-208	ENST00000588935	AMIGO3	Q86WK7	504 aa		18.87	■□□□□ 0.61
CNN1-208	ENST00000588935	COL5A3	P25940	1745 aa	Predicted RBP	18.86	■□□□□ 0.61
CNN1-208	ENST00000588935	ZNF831	Q5JPB2	1677 aa		18.86	■□□□□ 0.61
CNN1-208	ENST00000588935	CNTNAP4	Q9C0A0	1308 aa		18.86	■□□□□ 0.61
CNN1-208	ENST00000588935	ANXA1	P04083	346 aa		18.86	■□□□□ 0.61
CNN1-208	ENST00000588935	MYL6B	P14649	208 aa		18.86	■□□□□ 0.61
CNN1-208	ENST00000588935	HMGB2	P26583	209 aa	Known RBP	18.86	■□□□□ 0.61
CNN1-208	ENST00000588935	TWISTNB	Q3B726	338 aa	Predicted RBP	18.86	■□□□□ 0.61
CNN1-208	ENST00000588935	RC3H1	Q5TC82	1133 aa	Known RBP	18.86	■□□□□ 0.61
CNN1-208	ENST00000588935	RTCB	Q9Y3I0	505 aa	Known RBP	18.86	■□□□□ 0.61
CNN1-208	ENST00000588935	RPS6KA4	O75676	772 aa		18.85	■□□□□ 0.61
CNN1-208	ENST00000588935	HDGFL1	Q5TGJ6	251 aa		18.85	■□□□□ 0.61
CNN1-208	ENST00000588935	PDGFD	Q9GZP0	370 aa	Predicted RBP	18.85	■□□□□ 0.61
CNN1-208	ENST00000588935	TRAPPC3L	Q5T215	181 aa		18.84	■□□□□ 0.61
CNN1-208	ENST00000588935	COL23A1	Q86Y22	540 aa	Predicted RBP	18.84	■□□□□ 0.61
CNN1-208	ENST00000588935	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	18.83	■□□□□ 0.6
CNN1-208	ENST00000588935	NBPF26	B4DH59	902 aa		18.83	■□□□□ 0.6
CNN1-208	ENST00000588935	NBPF10	Q6P3W6	841 aa	Known RBP	18.83	■□□□□ 0.6
CNN1-208	ENST00000588935	NPM2	Q86SE8	214 aa	Known RBP	18.83	■□□□□ 0.6
CNN1-208	ENST00000588935	NBPF15	Q8N660	670 aa		18.83	■□□□□ 0.6
CNN1-208	ENST00000588935	PNPLA7	Q6ZV29	1317 aa		18.82	■□□□□ 0.6
CNN1-208	ENST00000588935	TUBGCP6	Q96RT7	1819 aa		18.82	■□□□□ 0.6
CNN1-208	ENST00000588935	VAMP4	O75379	141 aa		18.82	■□□□□ 0.6
CNN1-208	ENST00000588935	TRMT2A	Q8IZ69	625 aa	Known RBP	18.82	■□□□□ 0.6
CNN1-208	ENST00000588935	ARHGEF1	Q92888	912 aa	Known RBP	18.82	■□□□□ 0.6
CNN1-208	ENST00000588935	CHPF2	Q9P2E5	772 aa		18.82	■□□□□ 0.6
CNN1-208	ENST00000588935	PROSER3	Q2NL68	480 aa		18.81	■□□□□ 0.6
CNN1-208	ENST00000588935	TBC1D2B	Q9UPU7	963 aa		18.81	■□□□□ 0.6
CNN1-208	ENST00000588935	UBR3	Q6ZT12	1888 aa		18.81	■□□□□ 0.6
CNN1-208	ENST00000588935	LAMB4	A4D0S4	1761 aa		18.81	■□□□□ 0.6
CNN1-208	ENST00000588935	SOS1	Q07889	1333 aa	Predicted RBP	18.8	■□□□□ 0.6
CNN1-208	ENST00000588935	HOXB7	P09629	217 aa		18.8	■□□□□ 0.6
CNN1-208	ENST00000588935	RFC4	P35249	363 aa		18.8	■□□□□ 0.6
CNN1-208	ENST00000588935	CIC	Q96RK0	1608 aa	Predicted RBP	18.79	■□□□□ 0.6
CNN1-208	ENST00000588935	SSFA2	P28290	1259 aa		18.79	■□□□□ 0.6
CNN1-208	ENST00000588935	EIF5	P55010	431 aa	Known RBP	18.79	■□□□□ 0.6
CNN1-208	ENST00000588935	AIMP1	Q12904	312 aa	Known RBP	18.79	■□□□□ 0.6
CNN1-208	ENST00000588935	PDIA6	Q15084	440 aa		18.79	■□□□□ 0.6
CNN1-208	ENST00000588935	CCDC30	Q5VVM6	783 aa		18.79	■□□□□ 0.6
CNN1-208	ENST00000588935	SRP68	Q9UHB9	627 aa	Known RBP	18.79	■□□□□ 0.6
CNN1-208	ENST00000588935	IL6ST	P40189	918 aa	Predicted RBP	18.78	■□□□□ 0.6
CNN1-208	ENST00000588935	FLAD1	Q8NFF5	587 aa		18.78	■□□□□ 0.6
CNN1-208	ENST00000588935	ZBTB7A	O95365	584 aa		18.77	■□□□□ 0.6
CNN1-208	ENST00000588935	MSL1	Q68DK7	614 aa		18.77	■□□□□ 0.6
CNN1-208	ENST00000588935	STK31	Q9BXU1	1019 aa		18.77	■□□□□ 0.6
CNN1-208	ENST00000588935	DDX21	Q9NR30	783 aa	Known RBP eCLIP	18.77	■□□□□ 0.6
CNN1-208	ENST00000588935	DBF4	Q9UBU7	674 aa	Predicted RBP	18.77	■□□□□ 0.6
CNN1-208	ENST00000588935	ATF5	Q9Y2D1	282 aa	Predicted RBP	18.77	■□□□□ 0.6
CNN1-208	ENST00000588935	COL15A1	P39059	1388 aa		18.77	■□□□□ 0.6
CNN1-208	ENST00000588935	ZPR1	O75312	459 aa		18.76	■□□□□ 0.59
CNN1-208	ENST00000588935	SLC4A2	P04920	1241 aa		18.76	■□□□□ 0.59
CNN1-208	ENST00000588935	TTLL7	Q6ZT98	887 aa		18.76	■□□□□ 0.59
CNN1-208	ENST00000588935	DZIP3	Q86Y13	1208 aa	Known RBP	18.76	■□□□□ 0.59
CNN1-208	ENST00000588935	PHAX	Q9H814	394 aa	Known RBP	18.76	■□□□□ 0.59
CNN1-208	ENST00000588935		A0A087WZG4	1122 aa		18.75	■□□□□ 0.59
CNN1-208	ENST00000588935	ADRA2B	P18089	450 aa		18.75	■□□□□ 0.59
CNN1-208	ENST00000588935	USPL1	Q5W0Q7	1092 aa		18.75	■□□□□ 0.59
CNN1-208	ENST00000588935	COPS6	Q7L5N1	327 aa		18.75	■□□□□ 0.59
CNN1-208	ENST00000588935	XAGE3	Q8WTP9	111 aa		18.75	■□□□□ 0.59
CNN1-208	ENST00000588935	ERBB4	Q15303	1308 aa		18.74	■□□□□ 0.59
CNN1-208	ENST00000588935	BCL2L13	Q9BXK5	485 aa		18.74	■□□□□ 0.59
CNN1-208	ENST00000588935	CHMP4A	Q9BY43	222 aa		18.74	■□□□□ 0.59
CNN1-208	ENST00000588935	G2E3	Q7L622	706 aa		18.73	■□□□□ 0.59
CNN1-208	ENST00000588935	ZBTB3	Q9H5J0	574 aa		18.73	■□□□□ 0.59
CNN1-208	ENST00000588935	HYPK	Q9NX55	129 aa		18.73	■□□□□ 0.59
CNN1-208	ENST00000588935	NARF	Q9UHQ1	456 aa		18.73	■□□□□ 0.59
CNN1-208	ENST00000588935	BICDL1	Q6ZP65	573 aa		18.72	■□□□□ 0.59
CNN1-208	ENST00000588935	QSER1	Q2KHR3	1735 aa		18.71	■□□□□ 0.59
CNN1-208	ENST00000588935	KIF6	Q6ZMV9	814 aa		18.71	■□□□□ 0.59
CNN1-208	ENST00000588935	LRP10	Q7Z4F1	713 aa		18.71	■□□□□ 0.59
CNN1-208	ENST00000588935	SSH1	Q8WYL5	1049 aa		18.71	■□□□□ 0.59
CNN1-208	ENST00000588935	C4A	P0C0L4	1744 aa		18.71	■□□□□ 0.59
CNN1-208	ENST00000588935	CAMTA2	O94983	1202 aa		18.7	■□□□□ 0.58
CNN1-208	ENST00000588935	GYS1	P13807	737 aa		18.7	■□□□□ 0.58
CNN1-208	ENST00000588935	FKBP8	Q14318	412 aa		18.7	■□□□□ 0.58
CNN1-208	ENST00000588935	HLF	Q16534	295 aa		18.7	■□□□□ 0.58
CNN1-208	ENST00000588935	USP42	Q9H9J4	1324 aa	Known RBP	18.7	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms