RNA–Protein interactions for RNA: ENST00000583927.1

SKA2-208, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2

Gene SKA2, Length 533 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-208ENST00000583927 FMNL2Q96PY5 1086 aa13.13□□□□□ -0.31
SKA2-208ENST00000583927 USP42Q9H9J4 1324 aaKnown RBP13.13□□□□□ -0.31
SKA2-208ENST00000583927 SCN7AQ01118 1682 aa13.12□□□□□ -0.31
SKA2-208ENST00000583927 NFE2L2Q16236 605 aa13.12□□□□□ -0.31
SKA2-208ENST00000583927 BCORQ6W2J9 1755 aa13.12□□□□□ -0.31
SKA2-208ENST00000583927 N4BP2Q86UW6 1770 aaPredicted RBP13.12□□□□□ -0.31
SKA2-208ENST00000583927 ARFGEF1Q9Y6D6 1849 aa13.11□□□□□ -0.31
SKA2-208ENST00000583927 COL15A1P39059 1388 aa13.11□□□□□ -0.31
SKA2-208ENST00000583927 TAF7Q15545 349 aaPredicted RBP13.11□□□□□ -0.31
SKA2-208ENST00000583927 MCM10Q7L590 875 aa13.11□□□□□ -0.31
SKA2-208ENST00000583927 NLGN2Q8NFZ4 835 aa13.11□□□□□ -0.31
SKA2-208ENST00000583927 MMP10P09238 476 aa13.1□□□□□ -0.31
SKA2-208ENST00000583927 EIF5P55010 431 aaKnown RBP13.1□□□□□ -0.31
SKA2-208ENST00000583927 NARFQ9UHQ1 456 aa13.1□□□□□ -0.31
SKA2-208ENST00000583927 ZBTB1Q9Y2K1 713 aa13.1□□□□□ -0.31
SKA2-208ENST00000583927 C10orf71Q711Q0 1435 aa13.1□□□□□ -0.31
SKA2-208ENST00000583927 MAPK8IP3Q9UPT6 1336 aa13.1□□□□□ -0.31
SKA2-208ENST00000583927 PNISRQ8TF01 805 aaKnown RBP13.09□□□□□ -0.31
SKA2-208ENST00000583927 DLEC1Q9Y238 1755 aa13.08□□□□□ -0.32
SKA2-208ENST00000583927 ZPR1O75312 459 aa13.08□□□□□ -0.32
SKA2-208ENST00000583927 TM4SF1P30408 202 aa13.08□□□□□ -0.32
SKA2-208ENST00000583927 IL6STP40189 918 aaPredicted RBP13.08□□□□□ -0.32
SKA2-208ENST00000583927 TGFB2P61812 414 aa13.08□□□□□ -0.32
SKA2-208ENST00000583927 DCTN1Q14203 1278 aa13.08□□□□□ -0.32
SKA2-208ENST00000583927 KLHL34Q8N239 644 aa13.08□□□□□ -0.32
SKA2-208ENST00000583927 A0A087WZG4 1122 aa13.07□□□□□ -0.32
SKA2-208ENST00000583927 KCNQ3O43525 872 aa13.07□□□□□ -0.32
SKA2-208ENST00000583927 GRIN3BO60391 1043 aa13.07□□□□□ -0.32
SKA2-208ENST00000583927 SNRPA1P09661 255 aaKnown RBP13.07□□□□□ -0.32
SKA2-208ENST00000583927 YY1P25490 414 aa13.07□□□□□ -0.32
SKA2-208ENST00000583927 FKBP8Q14318 412 aa13.07□□□□□ -0.32
SKA2-208ENST00000583927 GPR162Q16538 588 aa13.07□□□□□ -0.32
SKA2-208ENST00000583927 BABAM1Q9NWV8 329 aa13.07□□□□□ -0.32
SKA2-208ENST00000583927 SRP68Q9UHB9 627 aaKnown RBP13.07□□□□□ -0.32
SKA2-208ENST00000583927 PARP3Q9Y6F1 533 aa13.07□□□□□ -0.32
SKA2-208ENST00000583927 NUP98P52948 1817 aa13.06□□□□□ -0.32
SKA2-208ENST00000583927 TMPOP42166 694 aaKnown RBP13.06□□□□□ -0.32
SKA2-208ENST00000583927 LMOD3Q0VAK6 560 aa13.06□□□□□ -0.32
SKA2-208ENST00000583927 PXDNLA1KZ92 1463 aa13.05□□□□□ -0.32
SKA2-208ENST00000583927 ZNF316A6NFI3 1004 aaPredicted RBP13.05□□□□□ -0.32
SKA2-208ENST00000583927 POLRMTO00411 1230 aaKnown RBP13.05□□□□□ -0.32
SKA2-208ENST00000583927 RGL2O15211 777 aa13.05□□□□□ -0.32
SKA2-208ENST00000583927 CANXP27824 592 aaKnown RBP13.05□□□□□ -0.32
SKA2-208ENST00000583927 USPL1Q5W0Q7 1092 aa13.05□□□□□ -0.32
SKA2-208ENST00000583927 RUNDC1Q96C34 613 aa13.05□□□□□ -0.32
SKA2-208ENST00000583927 USP16Q9Y5T5 823 aa13.05□□□□□ -0.32
SKA2-208ENST00000583927 ANKRD31Q8N7Z5 1873 aa13.04□□□□□ -0.32
SKA2-208ENST00000583927 YBX3P16989 372 aaKnown RBP eCLIP13.04□□□□□ -0.324e-8■□□□□ 8.4
SKA2-208ENST00000583927 RIPK4P57078 832 aa13.04□□□□□ -0.32
SKA2-208ENST00000583927 DDR1Q08345 913 aa13.04□□□□□ -0.32
SKA2-208ENST00000583927 WDR43Q15061 677 aaKnown RBP eCLIP13.04□□□□□ -0.32
SKA2-208ENST00000583927 BCL2L12Q9HB09 334 aa13.04□□□□□ -0.32
SKA2-208ENST00000583927 A1BGP04217 495 aa13.03□□□□□ -0.32
SKA2-208ENST00000583927 ADAMTS8Q9UP79 889 aa13.03□□□□□ -0.32
SKA2-208ENST00000583927 SBF1O95248 1867 aa13.02□□□□□ -0.32
SKA2-208ENST00000583927 GIGYF1O75420 1035 aaPredicted RBP13.02□□□□□ -0.33
SKA2-208ENST00000583927 EIF4A1P60842 406 aaKnown RBP13.02□□□□□ -0.33
SKA2-208ENST00000583927 NFIXQ14938 502 aa13.02□□□□□ -0.33
SKA2-208ENST00000583927 CLEC4GQ6UXB4 293 aa13.02□□□□□ -0.33
SKA2-208ENST00000583927 PRAMEF22A3QJZ6 481 aa13.01□□□□□ -0.33
SKA2-208ENST00000583927 NPM2Q86SE8 214 aaKnown RBP13.01□□□□□ -0.33
SKA2-208ENST00000583927 ARFGEF2Q9Y6D5 1785 aa13□□□□□ -0.33
SKA2-208ENST00000583927 ERBB4Q15303 1308 aa13□□□□□ -0.33
SKA2-208ENST00000583927 CAMTA2O94983 1202 aa13□□□□□ -0.33
SKA2-208ENST00000583927 KCNA3P22001 575 aa13□□□□□ -0.33
SKA2-208ENST00000583927 THUMPD2Q9BTF0 503 aaKnown RBP13□□□□□ -0.33
SKA2-208ENST00000583927 MIS18AQ9NYP9 233 aa13□□□□□ -0.33
SKA2-208ENST00000583927 TRIM35Q9UPQ4 493 aa13□□□□□ -0.33
SKA2-208ENST00000583927 CARMIL3Q8ND23 1372 aa12.99□□□□□ -0.33
SKA2-208ENST00000583927 NBPF26B4DH59 902 aa12.99□□□□□ -0.33
SKA2-208ENST00000583927 NBPF10Q6P3W6 841 aaKnown RBP12.99□□□□□ -0.33
SKA2-208ENST00000583927 PELP1Q8IZL8 1130 aaKnown RBP12.99□□□□□ -0.33
SKA2-208ENST00000583927 NBPF15Q8N660 670 aa12.99□□□□□ -0.33
SKA2-208ENST00000583927 TSPYL4Q9UJ04 414 aa12.99□□□□□ -0.33
SKA2-208ENST00000583927 CCDC88AQ3V6T2 1871 aa12.99□□□□□ -0.33
SKA2-208ENST00000583927 SERPINB2P05120 415 aa12.98□□□□□ -0.33
SKA2-208ENST00000583927 DZIP3Q86Y13 1208 aaKnown RBP12.98□□□□□ -0.33
SKA2-208ENST00000583927 CCDC146Q8IYE0 955 aa12.98□□□□□ -0.33
SKA2-208ENST00000583927 PDZRN3Q9UPQ7 1066 aa12.98□□□□□ -0.33
SKA2-208ENST00000583927 TBC1D2BQ9UPU7 963 aa12.98□□□□□ -0.33
SKA2-208ENST00000583927 CACNA1FO60840 1977 aa12.98□□□□□ -0.33
SKA2-208ENST00000583927 ANKRD36CQ5JPF3 1778 aa12.97□□□□□ -0.33
SKA2-208ENST00000583927 A0A0G2JLW4 131 aa12.97□□□□□ -0.33
SKA2-208ENST00000583927 CHL1O00533 1208 aa12.97□□□□□ -0.33
SKA2-208ENST00000583927 DPEP1P16444 411 aa12.97□□□□□ -0.33
SKA2-208ENST00000583927 NCBP3Q53F19 620 aaKnown RBP12.97□□□□□ -0.33
SKA2-208ENST00000583927 TBC1D9BQ66K14 1250 aa12.97□□□□□ -0.33
SKA2-208ENST00000583927 PIM2Q9P1W9 311 aa12.97□□□□□ -0.33
SKA2-208ENST00000583927 ZNF652Q9Y2D9 606 aa12.97□□□□□ -0.33
SKA2-208ENST00000583927 CACNA1SQ13698 1873 aa12.97□□□□□ -0.33
SKA2-208ENST00000583927 COL11A2P13942 1736 aaPredicted RBP12.96□□□□□ -0.33
SKA2-208ENST00000583927 ERVV-1B6SEH8 477 aa12.96□□□□□ -0.33
SKA2-208ENST00000583927 ZNF784Q8NCA9 323 aaPredicted RBP12.96□□□□□ -0.33
SKA2-208ENST00000583927 SETDB2Q96T68 719 aa12.96□□□□□ -0.33
SKA2-208ENST00000583927 ZNF330Q9Y3S2 320 aaPredicted RBP12.96□□□□□ -0.33
SKA2-208ENST00000583927 DICER1Q9UPY3 1922 aaKnown RBP12.96□□□□□ -0.34
SKA2-208ENST00000583927 ADCY9O60503 1353 aa12.95□□□□□ -0.34
SKA2-208ENST00000583927 FER1L6Q2WGJ9 1857 aa12.95□□□□□ -0.34
SKA2-208ENST00000583927 ANP32CO43423 234 aa12.95□□□□□ -0.34
SKA2-208ENST00000583927 HOXB7P09629 217 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 162.1 ms