RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 MYH16Q9H6N6 1097 aa11.11□□□□□ -0.63
NUP88-211ENST00000575976 EXOSC9Q06265 439 aaKnown RBP11.1□□□□□ -0.63
NUP88-211ENST00000575976 DUSP27Q5VZP5 1158 aa11.1□□□□□ -0.63
NUP88-211ENST00000575976 TRMT2AQ8IZ69 625 aaKnown RBP11.1□□□□□ -0.63
NUP88-211ENST00000575976 TSPYL6Q8N831 410 aa11.1□□□□□ -0.63
NUP88-211ENST00000575976 ANO8Q9HCE9 1232 aaPredicted RBP11.1□□□□□ -0.63
NUP88-211ENST00000575976 RREB1Q92766 1687 aa11.1□□□□□ -0.63
NUP88-211ENST00000575976 TJP1Q07157 1748 aa11.09□□□□□ -0.63
NUP88-211ENST00000575976 CEP350Q5VT06 3117 aa11.09□□□□□ -0.63
NUP88-211ENST00000575976 STARD3NLO95772 234 aa11.09□□□□□ -0.63
NUP88-211ENST00000575976 EIF2S2P20042 333 aaKnown RBP11.09□□□□□ -0.63
NUP88-211ENST00000575976 CRKLP46109 303 aaKnown RBP11.09□□□□□ -0.63
NUP88-211ENST00000575976 ZNF827Q17R98 1081 aa11.09□□□□□ -0.63
NUP88-211ENST00000575976 INTS5Q6P9B9 1019 aaKnown RBP11.09□□□□□ -0.63
NUP88-211ENST00000575976 AKT1S1Q96B36 256 aa11.09□□□□□ -0.63
NUP88-211ENST00000575976 CNTNAP4Q9C0A0 1308 aa11.09□□□□□ -0.63
NUP88-211ENST00000575976 ZNF831Q5JPB2 1677 aa11.08□□□□□ -0.64
NUP88-211ENST00000575976 A1BGP04217 495 aa11.08□□□□□ -0.64
NUP88-211ENST00000575976 HMGB2P26583 209 aaKnown RBP11.08□□□□□ -0.64
NUP88-211ENST00000575976 RC3H1Q5TC82 1133 aaKnown RBP11.08□□□□□ -0.64
NUP88-211ENST00000575976 SMIM5Q71RC9 77 aa11.08□□□□□ -0.64
NUP88-211ENST00000575976 NECTIN2Q92692 538 aa11.08□□□□□ -0.64
NUP88-211ENST00000575976 CCDC87Q9NVE4 849 aa11.08□□□□□ -0.64
NUP88-211ENST00000575976 STK32BQ9NY57 414 aa11.08□□□□□ -0.64
NUP88-211ENST00000575976 NUP188Q5SRE5 1749 aa11.08□□□□□ -0.64
NUP88-211ENST00000575976 CHD4Q14839 1912 aa11.07□□□□□ -0.64
NUP88-211ENST00000575976 CICQ96RK0 1608 aaPredicted RBP11.07□□□□□ -0.64
NUP88-211ENST00000575976 HOXB7P09629 217 aa11.07□□□□□ -0.64
NUP88-211ENST00000575976 CANXP27824 592 aaKnown RBP11.07□□□□□ -0.64
NUP88-211ENST00000575976 PIP4K2AP48426 406 aaPredicted RBP11.07□□□□□ -0.64
NUP88-211ENST00000575976 SLC15A2Q16348 729 aa11.07□□□□□ -0.64
NUP88-211ENST00000575976 TWISTNBQ3B726 338 aaPredicted RBP11.07□□□□□ -0.64
NUP88-211ENST00000575976 AMIGO3Q86WK7 504 aa11.07□□□□□ -0.64
NUP88-211ENST00000575976 AK7Q96M32 723 aa11.07□□□□□ -0.64
NUP88-211ENST00000575976 ZBTB1Q9Y2K1 713 aa11.07□□□□□ -0.64
NUP88-211ENST00000575976 C5P01031 1676 aa11.07□□□□□ -0.64
NUP88-211ENST00000575976 TAF1LQ8IZX4 1826 aa11.07□□□□□ -0.64
NUP88-211ENST00000575976 C4BP0C0L5 1744 aa11.06□□□□□ -0.64
NUP88-211ENST00000575976 GNPATO15228 680 aa11.06□□□□□ -0.64
NUP88-211ENST00000575976 VAMP4O75379 141 aa11.06□□□□□ -0.64
NUP88-211ENST00000575976 RPS6KA4O75676 772 aa11.06□□□□□ -0.64
NUP88-211ENST00000575976 HDGFL1Q5TGJ6 251 aa11.06□□□□□ -0.64
NUP88-211ENST00000575976 TFCP2L1Q9NZI6 479 aa11.06□□□□□ -0.64
NUP88-211ENST00000575976 COL5A3P25940 1745 aaPredicted RBP11.06□□□□□ -0.64
NUP88-211ENST00000575976 NBPF26B4DH59 902 aa11.05□□□□□ -0.64
NUP88-211ENST00000575976 PHF14O94880 888 aa11.05□□□□□ -0.64
NUP88-211ENST00000575976 NBPF10Q6P3W6 841 aaKnown RBP11.05□□□□□ -0.64
NUP88-211ENST00000575976 NBPF15Q8N660 670 aa11.05□□□□□ -0.64
NUP88-211ENST00000575976 RTCBQ9Y3I0 505 aaKnown RBP11.05□□□□□ -0.64
NUP88-211ENST00000575976 SOS1Q07889 1333 aaPredicted RBP11.05□□□□□ -0.64
NUP88-211ENST00000575976 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.04□□□□□ -0.64
NUP88-211ENST00000575976 TCERG1O14776 1098 aaKnown RBP11.04□□□□□ -0.64
NUP88-211ENST00000575976 ANXA1P04083 346 aa11.04□□□□□ -0.64
NUP88-211ENST00000575976 MYL6BP14649 208 aa11.04□□□□□ -0.64
NUP88-211ENST00000575976 IL6STP40189 918 aaPredicted RBP11.04□□□□□ -0.64
NUP88-211ENST00000575976 EIF5P55010 431 aaKnown RBP11.04□□□□□ -0.64
NUP88-211ENST00000575976 PDIA6Q15084 440 aa11.04□□□□□ -0.64
NUP88-211ENST00000575976 MYH14Q7Z406 1995 aaKnown RBP11.04□□□□□ -0.64
NUP88-211ENST00000575976 UTRNP46939 3433 aa11.04□□□□□ -0.64
NUP88-211ENST00000575976 ERBB4Q15303 1308 aa11.04□□□□□ -0.64
NUP88-211ENST00000575976 PNPLA7Q6ZV29 1317 aa11.04□□□□□ -0.64
NUP88-211ENST00000575976 LAMB4A4D0S4 1761 aa11.03□□□□□ -0.64
NUP88-211ENST00000575976 SSFA2P28290 1259 aa11.03□□□□□ -0.64
NUP88-211ENST00000575976 PROSER3Q2NL68 480 aa11.03□□□□□ -0.64
NUP88-211ENST00000575976 TRAPPC3LQ5T215 181 aa11.03□□□□□ -0.64
NUP88-211ENST00000575976 CCDC30Q5VVM6 783 aa11.03□□□□□ -0.64
NUP88-211ENST00000575976 COL23A1Q86Y22 540 aaPredicted RBP11.03□□□□□ -0.64
NUP88-211ENST00000575976 ARHGEF1Q92888 912 aaKnown RBP11.03□□□□□ -0.64
NUP88-211ENST00000575976 DDX21Q9NR30 783 aaKnown RBP eCLIP11.03□□□□□ -0.64
NUP88-211ENST00000575976 CHPF2Q9P2E5 772 aa11.03□□□□□ -0.64
NUP88-211ENST00000575976 ZNF330Q9Y3S2 320 aaPredicted RBP11.03□□□□□ -0.64
NUP88-211ENST00000575976 LRP10Q7Z4F1 713 aa11.02□□□□□ -0.65
NUP88-211ENST00000575976 FLAD1Q8NFF5 587 aa11.02□□□□□ -0.65
NUP88-211ENST00000575976 PDGFDQ9GZP0 370 aaPredicted RBP11.02□□□□□ -0.65
NUP88-211ENST00000575976 DBF4Q9UBU7 674 aaPredicted RBP11.02□□□□□ -0.65
NUP88-211ENST00000575976 ADRA2BP18089 450 aa11.01□□□□□ -0.65
NUP88-211ENST00000575976 ARXQ96QS3 562 aa11.01□□□□□ -0.65
NUP88-211ENST00000575976 CHMP4AQ9BY43 222 aa11.01□□□□□ -0.65
NUP88-211ENST00000575976 TBC1D2BQ9UPU7 963 aa11.01□□□□□ -0.65
NUP88-211ENST00000575976 COL15A1P39059 1388 aa11.01□□□□□ -0.65
NUP88-211ENST00000575976 UBR3Q6ZT12 1888 aa11□□□□□ -0.65
NUP88-211ENST00000575976 SLC4A2P04920 1241 aa11□□□□□ -0.65
NUP88-211ENST00000575976 CT47B1P0C2W7 299 aaPredicted RBP11□□□□□ -0.65
NUP88-211ENST00000575976 RFC4P35249 363 aa11□□□□□ -0.65
NUP88-211ENST00000575976 AIMP1Q12904 312 aaKnown RBP11□□□□□ -0.65
NUP88-211ENST00000575976 TTLL7Q6ZT98 887 aa11□□□□□ -0.65
NUP88-211ENST00000575976 COPS6Q7L5N1 327 aa11□□□□□ -0.65
NUP88-211ENST00000575976 NPM2Q86SE8 214 aaKnown RBP11□□□□□ -0.65
NUP88-211ENST00000575976 DZIP3Q86Y13 1208 aaKnown RBP11□□□□□ -0.65
NUP88-211ENST00000575976 XAGE3Q8WTP9 111 aa11□□□□□ -0.65
NUP88-211ENST00000575976 STK31Q9BXU1 1019 aa11□□□□□ -0.65
NUP88-211ENST00000575976 PHAXQ9H814 394 aaKnown RBP11□□□□□ -0.65
NUP88-211ENST00000575976 HYPKQ9NX55 129 aa11□□□□□ -0.65
NUP88-211ENST00000575976 SRP68Q9UHB9 627 aaKnown RBP11□□□□□ -0.65
NUP88-211ENST00000575976 TUBGCP6Q96RT7 1819 aa11□□□□□ -0.65
NUP88-211ENST00000575976 A0A087WZG4 1122 aa10.99□□□□□ -0.65
NUP88-211ENST00000575976 USPL1Q5W0Q7 1092 aa10.99□□□□□ -0.65
NUP88-211ENST00000575976 G2E3Q7L622 706 aa10.99□□□□□ -0.65
NUP88-211ENST00000575976 SSH1Q8WYL5 1049 aa10.99□□□□□ -0.65
NUP88-211ENST00000575976 ZNF428Q96B54 188 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms