RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 CHMP4AQ9BY43 222 aa22.08■■□□□ 1.12
NUP88-210ENST00000574867 PRAMEF22A3QJZ6 481 aa22.07■■□□□ 1.12
NUP88-210ENST00000574867 CYP19A1P11511 503 aaPredicted RBP22.07■■□□□ 1.12
NUP88-210ENST00000574867 TWISTNBQ3B726 338 aaPredicted RBP22.07■■□□□ 1.12
NUP88-210ENST00000574867 RC3H1Q5TC82 1133 aaKnown RBP22.06■■□□□ 1.12
NUP88-210ENST00000574867 USP16Q9Y5T5 823 aa22.06■■□□□ 1.12
NUP88-210ENST00000574867 CRKLP46109 303 aaKnown RBP22.05■■□□□ 1.12
NUP88-210ENST00000574867 ERBB4Q15303 1308 aa22.05■■□□□ 1.12
NUP88-210ENST00000574867 MYH14Q7Z406 1995 aaKnown RBP22.05■■□□□ 1.12
NUP88-210ENST00000574867 TSPYL6Q8N831 410 aa22.05■■□□□ 1.12
NUP88-210ENST00000574867 CCDC87Q9NVE4 849 aa22.05■■□□□ 1.12
NUP88-210ENST00000574867 ELL2O00472 640 aaPredicted RBP22.04■■□□□ 1.12
NUP88-210ENST00000574867 HDGFL1Q5TGJ6 251 aa22.04■■□□□ 1.12
NUP88-210ENST00000574867 AK7Q96M32 723 aa22.04■■□□□ 1.12
NUP88-210ENST00000574867 UBR3Q6ZT12 1888 aa22.03■■□□□ 1.12
NUP88-210ENST00000574867 QSER1Q2KHR3 1735 aa22.03■■□□□ 1.12
NUP88-210ENST00000574867 CT47B1P0C2W7 299 aaPredicted RBP22.03■■□□□ 1.12
NUP88-210ENST00000574867 NBPF14Q5TI25 921 aa22.03■■□□□ 1.12
NUP88-210ENST00000574867 AKT1S1Q96B36 256 aa22.03■■□□□ 1.12
NUP88-210ENST00000574867 STK32BQ9NY57 414 aa22.02■■□□□ 1.12
NUP88-210ENST00000574867 EIF2S2P20042 333 aaKnown RBP22.02■■□□□ 1.11
NUP88-210ENST00000574867 TUBGCP6Q96RT7 1819 aa22.01■■□□□ 1.11
NUP88-210ENST00000574867 INTS5Q6P9B9 1019 aaKnown RBP22.01■■□□□ 1.11
NUP88-210ENST00000574867 ZNF428Q96B54 188 aa22.01■■□□□ 1.11
NUP88-210ENST00000574867 ANO8Q9HCE9 1232 aaPredicted RBP22.01■■□□□ 1.11
NUP88-210ENST00000574867 ZBTB1Q9Y2K1 713 aa22.01■■□□□ 1.11
NUP88-210ENST00000574867 VAMP4O75379 141 aa22■■□□□ 1.11
NUP88-210ENST00000574867 ZNF827Q17R98 1081 aa22■■□□□ 1.11
NUP88-210ENST00000574867 CCDC30Q5VVM6 783 aa22■■□□□ 1.11
NUP88-210ENST00000574867 GNPATO15228 680 aa22■■□□□ 1.11
NUP88-210ENST00000574867 A1BGP04217 495 aa21.99■■□□□ 1.11
NUP88-210ENST00000574867 SLC15A2Q16348 729 aa21.99■■□□□ 1.11
NUP88-210ENST00000574867 RPS6KA4O75676 772 aa21.99■■□□□ 1.11
NUP88-210ENST00000574867 DBF4Q9UBU7 674 aaPredicted RBP21.99■■□□□ 1.11
NUP88-210ENST00000574867 RTCBQ9Y3I0 505 aaKnown RBP21.99■■□□□ 1.11
NUP88-210ENST00000574867 IL6STP40189 918 aaPredicted RBP21.98■■□□□ 1.11
NUP88-210ENST00000574867 TFCP2L1Q9NZI6 479 aa21.98■■□□□ 1.11
NUP88-210ENST00000574867 CACNA1FO60840 1977 aa21.98■■□□□ 1.11
NUP88-210ENST00000574867 CANXP27824 592 aaKnown RBP21.97■■□□□ 1.11
NUP88-210ENST00000574867 SSFA2P28290 1259 aa21.97■■□□□ 1.11
NUP88-210ENST00000574867 NECTIN2Q92692 538 aa21.97■■□□□ 1.11
NUP88-210ENST00000574867 ADRA2BP18089 450 aa21.97■■□□□ 1.11
NUP88-210ENST00000574867 STK31Q9BXU1 1019 aa21.97■■□□□ 1.11
NUP88-210ENST00000574867 DDX21Q9NR30 783 aaKnown RBP eCLIP21.97■■□□□ 1.11
NUP88-210ENST00000574867 NBPF26B4DH59 902 aa21.96■■□□□ 1.11
NUP88-210ENST00000574867 NBPF10Q6P3W6 841 aaKnown RBP21.96■■□□□ 1.11
NUP88-210ENST00000574867 NBPF15Q8N660 670 aa21.96■■□□□ 1.11
NUP88-210ENST00000574867 CHPF2Q9P2E5 772 aa21.96■■□□□ 1.11
NUP88-210ENST00000574867 COL15A1P39059 1388 aa21.96■■□□□ 1.11
NUP88-210ENST00000574867 NPM2Q86SE8 214 aaKnown RBP21.95■■□□□ 1.11
NUP88-210ENST00000574867 FLAD1Q8NFF5 587 aa21.95■■□□□ 1.11
NUP88-210ENST00000574867 C4AP0C0L4 1744 aa21.95■■□□□ 1.11
NUP88-210ENST00000574867 EIF5P55010 431 aaKnown RBP21.95■■□□□ 1.1
NUP88-210ENST00000574867 PDIA6Q15084 440 aa21.95■■□□□ 1.1
NUP88-210ENST00000574867 PIP4K2AP48426 406 aaPredicted RBP21.94■■□□□ 1.1
NUP88-210ENST00000574867 HYPKQ9NX55 129 aa21.94■■□□□ 1.1
NUP88-210ENST00000574867 A0A087WZG4 1122 aa21.93■■□□□ 1.1
NUP88-210ENST00000574867 MYL6BP14649 208 aa21.93■■□□□ 1.1
NUP88-210ENST00000574867 PNPLA7Q6ZV29 1317 aa21.92■■□□□ 1.1
NUP88-210ENST00000574867 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.92■■□□□ 1.1
NUP88-210ENST00000574867 ALDH1L2Q3SY69 923 aa21.92■■□□□ 1.1
NUP88-210ENST00000574867 PHF14O94880 888 aa21.92■■□□□ 1.1
NUP88-210ENST00000574867 PROSER3Q2NL68 480 aa21.92■■□□□ 1.1
NUP88-210ENST00000574867 TRAPPC3LQ5T215 181 aa21.92■■□□□ 1.1
NUP88-210ENST00000574867 LRP10Q7Z4F1 713 aa21.92■■□□□ 1.1
NUP88-210ENST00000574867 AMIGO3Q86WK7 504 aa21.92■■□□□ 1.1
NUP88-210ENST00000574867 ZNF330Q9Y3S2 320 aaPredicted RBP21.92■■□□□ 1.1
NUP88-210ENST00000574867 SCN7AQ01118 1682 aa21.91■■□□□ 1.1
NUP88-210ENST00000574867 BCORQ6W2J9 1755 aa21.9■■□□□ 1.1
NUP88-210ENST00000574867 ANXA1P04083 346 aa21.9■■□□□ 1.1
NUP88-210ENST00000574867 SLC4A2P04920 1241 aa21.89■■□□□ 1.1
NUP88-210ENST00000574867 CASZ1Q86V15 1759 aa21.89■■□□□ 1.09
NUP88-210ENST00000574867 TCERG1O14776 1098 aaKnown RBP21.89■■□□□ 1.09
NUP88-210ENST00000574867 ARHGEF1Q92888 912 aaKnown RBP21.89■■□□□ 1.09
NUP88-210ENST00000574867 RFC4P35249 363 aa21.88■■□□□ 1.09
NUP88-210ENST00000574867 RARSP54136 660 aaKnown RBP21.88■■□□□ 1.09
NUP88-210ENST00000574867 SSH1Q8WYL5 1049 aa21.88■■□□□ 1.09
NUP88-210ENST00000574867 R3HDM1Q15032 1099 aaKnown RBP21.87■■□□□ 1.09
NUP88-210ENST00000574867 DZIP3Q86Y13 1208 aaKnown RBP21.87■■□□□ 1.09
NUP88-210ENST00000574867 COL23A1Q86Y22 540 aaPredicted RBP21.87■■□□□ 1.09
NUP88-210ENST00000574867 SMC4Q9NTJ3 1288 aa21.87■■□□□ 1.09
NUP88-210ENST00000574867 KIF6Q6ZMV9 814 aa21.87■■□□□ 1.09
NUP88-210ENST00000574867 USP42Q9H9J4 1324 aaKnown RBP21.87■■□□□ 1.09
NUP88-210ENST00000574867 SMIM5Q71RC9 77 aa21.86■■□□□ 1.09
NUP88-210ENST00000574867 XAGE3Q8WTP9 111 aa21.86■■□□□ 1.09
NUP88-210ENST00000574867 NARFQ9UHQ1 456 aa21.86■■□□□ 1.09
NUP88-210ENST00000574867 COPS6Q7L5N1 327 aa21.86■■□□□ 1.09
NUP88-210ENST00000574867 RGL2O15211 777 aa21.85■■□□□ 1.09
NUP88-210ENST00000574867 ZPR1O75312 459 aa21.85■■□□□ 1.09
NUP88-210ENST00000574867 BRPF1P55201 1214 aaPredicted RBP21.85■■□□□ 1.09
NUP88-210ENST00000574867 MRPL50Q8N5N7 158 aaKnown RBP21.85■■□□□ 1.09
NUP88-210ENST00000574867 PHAXQ9H814 394 aaKnown RBP21.85■■□□□ 1.09
NUP88-210ENST00000574867 MSH5O43196 834 aa21.84■■□□□ 1.09
NUP88-210ENST00000574867 FLIIQ13045 1269 aa21.84■■□□□ 1.09
NUP88-210ENST00000574867 TBC1D2BQ9UPU7 963 aa21.84■■□□□ 1.09
NUP88-210ENST00000574867 DDX58O95786 925 aaKnown RBP21.84■■□□□ 1.09
NUP88-210ENST00000574867 AIMP1Q12904 312 aaKnown RBP21.84■■□□□ 1.09
NUP88-210ENST00000574867 TTLL7Q6ZT98 887 aa21.84■■□□□ 1.09
NUP88-210ENST00000574867 ARXQ96QS3 562 aa21.84■■□□□ 1.09
NUP88-210ENST00000574867 BCL2L13Q9BXK5 485 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 146.7 ms